Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 seq45 95.1 1e-14 >seq14 Length=13523219 Score = 109 bits (120), Expect = 5e-19 Identities = 325/496 (66%), Gaps = 4/496 (1%) Strand=Plus/Minus Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 || || || |||| |||||||| |||||||| || | | | || || | | ||| Sbjct 9106322 CCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCATG 9106263 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAA-ATCTTTGGTTCTATATTCTTCGTTCCC 38087 || || || || | ||| || || ||| | || |||| ||| ||| | || || ||||| Sbjct 9106262 AACAAGTCGGGGATCCACAA-GCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCC 9106204 Query 38088 TACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | ||||| ||| |||| || || || || | ||| ||||||||| || | || | Sbjct 9106203 TGTGTTCTT-CTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACA 9106145 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | | || || ||||| || | || ||||| | | ||| | | ||||| || | Sbjct 9106144 TGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGT 9106085 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266 | | ||| | ||| || || | || || || |||||||| | || | || || | | Sbjct 9106084 AGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCC 9106025 Query 38267 CCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326 || | | || || || | || || || ||||| || || || || || | | Sbjct 9106024 CCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGG 9105965 Query 38327 CGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 | || || || | ||| ||| | || || || || ||||||||||| || | || | | Sbjct 9105964 CACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGA 9105905 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 | || || |||| |||||| ||||| ||||| || | |||||||| || || Sbjct 9105904 AGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGG 9105845 Query 38447 TGAACCATTTTTCCGA 38462 ||||||| || || || Sbjct 9105844 TGAACCACTTCTCTGA 9105829 >seq45 Length=2253462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || || ||||| || || || | || ||||| ||||||| || || Sbjct 2024579 TCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCTTC 2024638 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || ||||| |||||||| || ||||| |||||||||||||| ||||| || Sbjct 2024639 AGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAGCC 2024698 Query 11774 AC 11775 || Sbjct 2024699 AC 2024700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468469016266000