Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14 529 3e-145 seq6597 105 1e-17 seq45 93.3 6e-14 >seq14 Length=13523219 Score = 529 bits (586), Expect = 3e-145 Identities = 1312/1972 (67%), Gaps = 17/1972 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | || || | | || || ||||| || |||| | | ||| Sbjct 9107250 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTTTTCATCTCCTCGCTCCACAGTCCTCT 9107191 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || ||||| || || || | ||||| ||||| |||| || || Sbjct 9107190 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCT 9107131 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 9107130 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 9107071 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | |||| ||| Sbjct 9107070 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 9107011 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | ||||| || || | || | | | | ||| | || Sbjct 9107010 CTTTTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTGGGCGTCTTC-TCCCACATGTCG 9106953 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || || || | | ||| |||||| || || || || || Sbjct 9106952 TACTGGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCG 9106893 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 | || | || || |||||||| | || |||| || ||||| || || |||| | Sbjct 9106892 GCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATG 9106833 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 || || || || ||| |||| ||||| || ||| | || || || ||||| || Sbjct 9106832 TTCAGCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCC 9106773 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 || || || || || || || || || || || | ||| || || | ||||| || || Sbjct 9106772 AAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGGC 9106713 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || || ||||| ||||| || || || || ||| |||| || |||||| |||| Sbjct 9106712 ACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCACA 9106653 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGAC 79619 || ||||| || ||||| |||| || | || ||||||| | |||| Sbjct 9106652 GACTCCAGTTTTTTGAAGTCAAAA-GTCCGCTCGGGGGTGACGTACATGTTGAGAGCGAT 9106594 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679 || ||||||||||| ||||| ||||||| || | |||| | ||||| ||||| Sbjct 9106593 GGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCA 9106534 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 |||||| || || || ||||| || | ||| ||||| || ||||| |||| || || || Sbjct 9106533 GAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 9106474 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 79798 || || || ||| |||| ||||| || || |||| || || || | || | ||| | Sbjct 9106473 TTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAG 9106414 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 79858 | || ||||||| | | | |||| | | || | || || || || || | Sbjct 9106413 CTGCT-GAGCCTTCACAACACGCTTGACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCT 9106355 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 || ||||| || ||||| ||||| | || || || ||| |||||||||| | Sbjct 9106354 TCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGAG 9106295 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 79977 |||| || | || |||| ||||| || | || || ||||| | ||| || Sbjct 9106294 ACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACA-AGCCGTAG 9106236 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || |||||||||| ||| |||||||| || ||||| ||||| || || || ||||| | Sbjct 9106235 AAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCA 9106176 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | ||| | ||||| || |||| ||| ||||| | | || |||| ||||| || Sbjct 9106175 AACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCG 9106116 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | || | || ||||| || || ||||||| ||| || | | || || Sbjct 9106115 CCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCCGTTT 9106056 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 80217 || | || ||||| || | || ||||| || | | | || || | | | Sbjct 9106055 GAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACG 9105996 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || ||||| || || || ||||| | || || | || | ||| ||||| ||||| Sbjct 9105995 CCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCCG 9105936 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||||| ||||| ||||| | || || || ||||| |||| || | | | ||| Sbjct 9105935 TCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTT 9105876 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || || || || | |||||||| ||||| || ||||| || || || || || ||||| Sbjct 9105875 CCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAG 9105816 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || || | || ||| | || || || || || || || | ||| | |||| Sbjct 9105815 GTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAGCATG 9105756 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | || | | ||| || || |||| |||||| || |||| ||| Sbjct 9105755 TGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCCAGAGTC 9105696 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || ||||| ||||||| || || |||| ||| |||| || |||||||||| Sbjct 9105695 TTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGG 9105636 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAA-ATAATCGGAGAATGTTTCCC 80636 || || | || ||| | || | ||| | |||| | || || || || || | Sbjct 9105635 TCTTTGTTTTCAAGAACGATGTCGAGGGTC-TCCTTGGAGATCATAGGGGAGTGGCGTCT 9105577 Query 80637 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 80696 ||| ||| || || |||||||| | ||||||||||| ||||| || | ||| ||||| Sbjct 9105576 ATTCAGAGGGTTGACGTAGTTGAACAGGTCCTCCATCACCTCACTGAACACTTTCTTTGT 9105517 Query 80697 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTG 80756 |||||||| || || || ||||| || | || || | |||||||| ||||| |||| Sbjct 9105516 CTCCTTGTGCAGGTTGGAGACGGCGATCCGTGCAGCGAGGATGGCATAGTCTGGGTGTTT 9105457 Query 80757 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 80816 || || ||||| || || || || ||||||||||| | || || || || || || Sbjct 9105456 GGTCGTGAGGGTGGCAGCGATCTCTGCAGCCAGAGTGTCGAGCTCCACTGTGGTGACACC 9105397 Query 80817 ATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTT 80876 | | || | || ||||| |||||||| | || | | | ||||| | |||| ||| Sbjct 9105396 ACTGTACAGACCCTGGATCACCTTCATTGTGATCTGAGTTGGATCCACGAAGTCAGAGTT 9105337 Query 80877 TAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATGAC 80927 | ||||| || || |||| |||||||| ||||||||||| |||||||| Sbjct 9105336 CAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGAC 9105286 >seq6597 Length=1954 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || |||||||| || || || |||||||| || || | ||| | Sbjct 225 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCTCTTCT 284 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || ||||| ||||||||||| || ||||| || |||| Sbjct 285 TCAGCCAGAAGATGGAAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCCGCGAAGG 344 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 345 CCACCACCCGCTCTCC 360 >seq45 Length=2253462 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || || || || || ||||| || || || || ||||||| || | ||| | Sbjct 2024577 CCTCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCT 2024636 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| |||| || ||||| || || ||||||||||| || || || ||||| | Sbjct 2024637 TCAGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 2024696 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||| || Sbjct 2024697 CCACAATTCGCTCACC 2024712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718183281121000