Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14 497 1e-135 seq6597 102 1e-16 seq11 93.3 6e-14 seq45 84.2 3e-11 >seq14 Length=13523219 Score = 497 bits (550), Expect = 1e-135 Identities = 1303/1974 (66%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | || || | | ||||| ||||| || |||| | | ||| Sbjct 9107250 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTTTTCATCTCCTCGCTCCACAGTCCTCT 9107191 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || |||||||| || || | ||||| ||||| |||| || || Sbjct 9107190 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCT 9107131 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 9107130 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 9107071 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG-- 71286 || || || || ||||| || |||| || || || || || | || ||| | || Sbjct 9107070 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCC--GTGCTTGGCG 9107013 Query 71287 ATTTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNN 71345 || || || || || || |||| | | ||| || || | || Sbjct 9107012 ATCTTTTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTC 9106954 Query 71346 NNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405 ||||| || || | | ||| | ||||| ||||| || || | Sbjct 9106953 GTACTGGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTC 9106894 Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465 | || || || || |||||||| | || | || || ||||| || || |||| | Sbjct 9106893 GGCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGAT 9106834 Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525 || || || || || ||||| ||||| || ||| | || || || ||||| || Sbjct 9106833 GTTCAGCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGC 9106774 Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 || || || ||||| || || || || ||||| | ||| || || | ||||| || || Sbjct 9106773 CAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGG 9106714 Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645 | || || || ||||| ||||| || || || || || |||| || |||||| ||| Sbjct 9106713 CACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCAC 9106654 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 | || ||||| || ||||| ||| || | || ||| ||| | || | Sbjct 9106653 AGACTCCAGTTTTTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGAT 9106594 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 || ||||||||||| ||||| ||||||| || || |||| | ||||| ||||| Sbjct 9106593 GGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCA 9106534 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || || |||||||| || | ||| ||||| || ||||| |||| || || || Sbjct 9106533 GAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 9106474 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 || || || || |||| ||||| || || |||| || || || | || | ||| | Sbjct 9106473 TTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAG 9106414 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 | || ||||||| | | | |||| | | || | || || || || || | Sbjct 9106413 CTGCT-GAGCCTTCACAACACGCTTGACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCT 9106355 Query 71942 GTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 || ||||| || ||||| ||| | ||| | || || || || | |||||||||| Sbjct 9106354 TCTCAAACTCCTCCCCCCA-GCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGA 9106296 Query 72001 GACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 72059 ||||| || | | || | |||| ||||| || | || || ||||| | ||| | Sbjct 9106295 GACCAGTCCTGGTTGCTC-TCGACTCTCTTCATGAACAAGTCGGGGATCCACA-AGCCGT 9106238 Query 72060 A-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 | || |||||||||| ||| |||||||| || ||||| ||||| || || || ||||| Sbjct 9106237 AGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGT 9106178 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || |||| ||| ||||| | | || || | ||||| | Sbjct 9106177 CAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGC 9106118 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | ||||| || | || | || ||||| || || ||||||| ||| || | | || | Sbjct 9106117 CGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCCGT 9106058 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATA 72298 | || || ||||| || | || ||||| || | | | || ||| | | | Sbjct 9106057 TTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCA 9105998 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 || ||||| || || || ||||| | || || | || | ||| ||||| |||| Sbjct 9105997 CGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGC 9105938 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 72418 | || || || |||||| ||||| | || || || ||||| |||| || | | | | Sbjct 9105937 CGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGG 9105878 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| || || || | |||||||| ||||| || ||||| || || || || || |||| Sbjct 9105877 TTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGT 9105818 Query 72479 ACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 | ||||| || || | || ||| | || || || || || || || | ||| | || Sbjct 9105817 AGGTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAGCA 9105758 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| || | || | | ||| || || |||| ||||||||| |||| || Sbjct 9105757 TGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCCAGAG 9105698 Query 72599 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 | || || ||||| ||||||| || || |||| ||| |||| || |||| ||||| Sbjct 9105697 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGC 9105638 Query 72659 TATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTTTC 72717 || || | || ||| || || | ||| | |||| | || || || || || Sbjct 9105637 GGTCTTTGTTTTCAAGAACGATGTCGAGGGTC-TCCTTGGAGATCATAGGGGAGTGGCGT 9105579 Query 72718 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 72777 | ||| ||| || || |||||||| | ||||||||||| ||||| || | ||| ||| Sbjct 9105578 CTATTCAGAGGGTTGACGTAGTTGAACAGGTCCTCCATCACCTCACTGAACACTTTCTTT 9105519 Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 || |||||||| || || || ||||| || | || || || |||||||| ||||| ||| Sbjct 9105518 GTCTCCTTGTGCAGGTTGGAGACGGCGATCCGTGCAGCGAGGATGGCATAGTCTGGGTGT 9105459 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 | || || ||||| || || ||||| ||||||||||| | || || || || || Sbjct 9105458 TTGGTCGTGAGGGTGGCAGCGATCTCTGCAGCCAGAGTGTCGAGCTCCACTGTGGTGACA 9105399 Query 72898 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 72957 ||| | || | || ||||| |||||||| | || | | | ||||| | |||| | Sbjct 9105398 CCACTGTACAGACCCTGGATCACCTTCATTGTGATCTGAGTTGGATCCACGAAGTCAGAG 9105339 Query 72958 TTTAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATAAC 73010 || | ||||| || || |||| |||||||| ||||||||||| ||||| || Sbjct 9105338 TTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGAC 9105286 >seq6597 Length=1954 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | |||||||| || || || |||||||| || || | ||| | Sbjct 225 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCTCTTCT 284 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| ||||||||||| || |||||||| |||| Sbjct 285 TCAGCCAGAAGATGGAAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCCGCGAAGG 344 Query 42207 C 42207 | Sbjct 345 C 345 >seq11 Length=13916851 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || |||||||| || ||||| || ||||||| ||||| || | Sbjct 4877116 CACTGAACACTTTCTTGGTCTCCTTGTGCAGGTTTGACACAGCTATTCGTGCGGCCAGGA 4877057 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || |||| || || ||||| || | ||||||||||| ||||||| Sbjct 4877056 TTGCGTAGTCAGGGTGTTTAGTGGTGAGGGTGGCGGCGGTCTCTGCTGCCAGGGTGTCCA 4876997 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || ||||| | || | || ||||| ||| |||| Sbjct 4876996 GCTCCACGGTGGTGACTCCGCTGTAAAGACCCTGGATCACCCTCAT 4876951 >seq45 Length=2253462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| || || || | || ||||| || || || || ||||||| || | ||| | Sbjct 2024577 CCTCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCT 2024636 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || | || ||||| || || ||||||||||| || || || ||||| | Sbjct 2024637 TCAGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 2024696 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 2024697 CCACAATTCGCTCACC 2024712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671059292489000