Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq31 168 9e-37 seq33 136 6e-27 seq7 86.0 9e-12 >seq31 Length=6322506 Score = 168 bits (186), Expect = 9e-37 Identities = 182/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | |||||||| | || |||||| |||||||||||||||||| ||||| || || Sbjct 3651508 GCAGTGTTGACGATGTCGAATCCCACGCTTCCGCCGAAGGTGCTGGGCTTCCAATACTCC 3651567 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 || ||||||||| ||| |||| | ||| |||||||| | || ||||||| ||| | Sbjct 3651568 GGCGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACC 3651627 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| ||||||||||||||| ||| || | |||||| |||| | | |||| ||| | | Sbjct 3651628 ATGGTCTCACCGAAGATGGAGTTAGGCCTGGGCTTCTCCAAGAGCAGGCCGGGGTAGAGC 3651687 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||||||| |||| || |||||| | || || | || || |||||| |||||||| Sbjct 3651688 TCCACAGCATCGACGTGTCCGTACATCTCCTCCAGCACTGCGGCCATTTCCGTTTCTCCT 3651747 Query 8975 G 8975 | Sbjct 3651748 G 3651748 Score = 111 bits (122), Expect = 2e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || |||||||| || ||| ||||||| ||| || || || Sbjct 3653373 TCACCAATCAGGATGAGCCGCGTGGTCTGGAAGAGTCTTTCGTCATCCCAGTCGGGGTGC 3653432 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | |||| || |||||||| | |||||| |||| | ||| || || ||||||||| Sbjct 3653433 ACCTCCTTCAACACGTCGCACACGCGGTTGTGCTCCCGCATCCAAATGGTGGCGTACATC 3653492 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 || ||||| || ||||||||||| ||||| || || ||||| Sbjct 3653493 ATCAGACCCGGGACCAGGCCAAACGCCTCATGGCCAACAGC 3653533 >seq33 Length=5239102 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| ||| || || || | || || | |||||||| Sbjct 2354831 GGACACCACTTGGTGTTGAGACACACCAGTTTCTTCAAAGAAGCTGTTTTGACGATGTTG 2354890 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| ||||| ||||| || |||||||| | |||||||||||| ||| Sbjct 2354891 AAGCCCGTTTCTCCTCCGAACGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 2354950 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| |||||||| | ||| || ||||| |||| ||| | ||||||||||| || || Sbjct 2354951 CCCAGCAGGCCTTTCAAGGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAATATA 2355010 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 ||| ||||| | || |||| || || ||| ||||| ||||||| ||| |||||||| Sbjct 2355011 CTGTTAGGACGAGCTTTCTCCAGCAGGACTCCAGTGTAAAACTCCAGAGCATCGATGTCC 2355070 Query 8933 CCGTAAAG 8940 || || || Sbjct 2355071 CCATAGAG 2355078 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| |||||||||| ||||||||||| || || ||||| ||| |||||| Sbjct 2357206 TCACCGATCATGATGAGTCTGGTGGTCTGAAAAAGCTGCTCGTCGTCCCAGGTGGGATGT 2357265 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || || | || || ||||||||||| || || ||||| || || | |||||| Sbjct 2357266 TCGGCCTTGAGGATGTCACAGACTCTGTTGTGCTCTCTCAGCCACATGGTGGAGTACATG 2357325 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 ||||||| |||| |||| | ||| ||||||| ||||||| Sbjct 2357326 GTGAGACCCGGCAGGCTGCCATATAACTCCTGACCGATCACCAGACG 2357372 >seq7 Length=16146599 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || |||||||||||||| ||||||||| || || || | | | Sbjct 7520287 CAAAGCCGACTTTGCCTCCGAAGGTGCTGGGCTTCCAGTAATTTGGAGAACACAAGGGAT 7520346 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| || ||||||||||| || || || |||| ||| | |||||||| || || | Sbjct 7520347 TTCCCAGAAGCCCTTTGAGGGAGAAGGGGGCACCCATCTCCACCATGCTCTCTCCAAATA 7520406 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 || || || || | | |||| || || || | || || || | ||| ||||||| Sbjct 7520407 TGTTCTTCGGTCGTGTTCTCTCCAACATCAAGCCAGGATAAAATTCAAGAGCATCGATGT 7520466 Query 8931 CTCCGTA 8937 | ||||| Sbjct 7520467 CACCGTA 7520473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708440441266000