Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 116 3e-21 seq11 100 3e-16 >seq7 Length=16146599 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| ||||| |||| || | || || || || || | ||| || ||| Sbjct 1869769 CCTCCTCTCAGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1869710 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | || |||||||| || ||| | ||||| | | ||||| |||||||| Sbjct 1869709 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 1869650 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| ||||| || | | |||||| | | ||||| Sbjct 1869649 ATGCCCTCTTTGTCCTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACC 1869590 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || |||||||||||||||||||| Sbjct 1869589 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | ||| | || | || || ||||| || | ||| ||||| | Sbjct 1869541 CCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGAC 1869482 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| || || |||| || | || ||||| || ||||| Sbjct 1869481 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1869422 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || || ||||| | | |||||| | | ||||| Sbjct 1869421 ATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 1869362 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||||||||||||||| Sbjct 1869361 TCCAAAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 1869315 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||||| || | || | || | || || || ||||| | || || ||| Sbjct 1869998 TCCTCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGA 1869939 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | ||| |||||||| || || | ||||| | || ||||| || ||||| Sbjct 1869938 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGG 1869879 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| || || | || || || ||||| | | ||||| | | ||||| Sbjct 1869878 GATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGAC 1869819 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 1869818 CTCCAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 >seq11 Length=13916851 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || ||||||||||| ||||| ||||| ||||| | || || ||||||| Sbjct 8385143 CAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGA 8385084 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | |||||| | | ||||| |||| |||||||| || ||||| || || | Sbjct 8385083 CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCT 8385024 Query 94992 TCACAAAGATCTGCATGCTT 95011 |||| |||||||||||| || Sbjct 8385023 TCACGAAGATCTGCATGGTT 8385004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || ||||||||||| ||||| ||||| ||||| | || || ||||||| Sbjct 8402604 CAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGA 8402545 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | |||||| | | || || || | |||||||| || ||||| || || | Sbjct 8402544 CATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 8402485 Query 94992 TCACAAAGATCTGCATGCTTACA 95014 |||| |||||||||||| || || Sbjct 8402484 TCACGAAGATCTGCATGTTTGCA 8402462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237825329000