Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7058 165 1e-36 seq173 93.3 7e-15 >seq7058 Length=1743 Score = 165 bits (182), Expect = 1e-36 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | ||| || ||||||||||| |||||||||||||| || ||| Sbjct 211 GCAAAGCGTCACCGCAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCATC 152 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 151 CGCCGCCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACC 92 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| | ||||| ||| || |||| |||||| || ||| |||||| Sbjct 91 CGCGGCGTGTTGAAGGTTTTCCTGGAGAATGTCATCCGCGATGCTGTCACCTACACCGAG 32 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGG 16643 ||||| || | ||||| || ||| |||||| Sbjct 31 CACGCCAAGAGGAAGACCGTGACCGCCATGG 1 >seq173 Length=212820 Score = 93.3 bits (102), Expect = 7e-15 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAG-CCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGT 16518 ||||||||||| ||||| |||||| || || ||| | | ||||| | |||||||||| Sbjct 35995 GATAACATCCAGGGAATTACCAAGCCCCGCCATCTGCCACCTGGCACTCTGTGGTGGAGT 35936 Query 16519 CAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAA 16578 |||| | |||| || |||| || |||| || ||| |||||| | ||||| Sbjct 35935 GAAGCATATCTCCACTCTGATCTACGAGGAGACCTCTGTTGTGTTGAAGGTTTTCCTGTT 35876 Query 16579 GACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTC 16638 || || ||| ||||||| || ||| |||||||||| || | |||| || || | Sbjct 35875 GAATGTGATCTGTGATGCTGTCACCTACACCGAGCACGTCAAGAGGAAGATGGTGACTGC 35816 Query 16639 CATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||| | || ||||| ||| | |||||||| Sbjct 35815 CACGGACACGGTGTATGCTCCGAAGAGACAAGGCCG 35780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066491225825