Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq14 502 3e-137 seq6597 111 2e-19 seq45 102 1e-16 >seq14 Length=13523219 Score = 502 bits (556), Expect = 3e-137 Identities = 1305/1976 (66%), Gaps = 25/1976 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | || || | | || || ||||| || |||| | | ||| Sbjct 9107250 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTTTTCATCTCCTCGCTCCACAGTCCTCT 9107191 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | || ||||| || || || | ||||| ||||| |||| || || Sbjct 9107190 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCT 9107131 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 9107130 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 9107071 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | |||| | ||| Sbjct 9107070 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 9107011 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | || | | Sbjct 9107010 CTTTTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCG 9106953 Query 62543 T--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTT 62599 | || || || || || ||| | | || | ||| | ||||| ||||| || || || Sbjct 9106952 TACTGGAGGATGCCCTTGCTGACAGGAC-AGCCTTCGTATGTCTCGTAGGGGCCCAACTC 9106894 Query 62600 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62659 | || || || || |||||||| | || |||| || ||||| || ||||||| | Sbjct 9106893 GGCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGAT 9106834 Query 62660 ATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62719 || || || || || |||| ||||| || ||| | || || || ||||| || Sbjct 9106833 GTTCAGCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGC 9106774 Query 62720 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62779 || || || || || || || || || || || | ||| || || | ||||| || || Sbjct 9106773 CAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGG 9106714 Query 62780 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 62839 | || || || ||||| ||||| || || || || || |||| || |||||| ||| Sbjct 9106713 CACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCAC 9106654 Query 62840 ATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAAC 62896 | || |||||| || ||||| || || | || ||||||| | || | Sbjct 9106653 AGACTCCAGTTTTTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGAT 9106594 Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 || ||||||||||| ||||| ||||||| || | |||| | || || ||||| Sbjct 9106593 GGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCA 9106534 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 || || || || ||||| || || | ||| ||||| || ||||| |||| || || || Sbjct 9106533 GAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 9106474 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 63075 || || || ||| | || ||||| || || |||| || || || | || | ||| | Sbjct 9106473 TTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAG 9106414 Query 63076 CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA----GTGTATAC 63131 | || ||||||| | | | ||| | || ||| ||| ||| ||||| | Sbjct 9106413 CTGCT-GAGCCTTCACAACACGCTTGACCCGCCC--CTCCTTCTCATACTGGGTGTAGAG 9106357 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 || || ||||| || ||||| | ||||| || || || || ||||||||| Sbjct 9106356 CTTC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATC 9106299 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 | ||||| || || || |||| ||||| || | || || ||||| | ||| Sbjct 9106298 AGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACA-AGCC 9106240 Query 63252 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63310 || || |||||||||| ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 9106239 GTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAA 9106180 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | | ||| | ||||| || |||| ||| ||||| | | || || | ||||| Sbjct 9106179 GTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 9106120 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 || ||||| || | || | || ||||| || || ||||||| ||| || | | || Sbjct 9106119 GCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCC 9106060 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 |||||| | || ||||| || | || ||||| || | | | || || | | Sbjct 9106059 GTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGC 9106000 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | || ||||| || || || ||||| | || || | || | ||||||||| || Sbjct 9105999 CACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAAT 9105940 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || ||||| ||||| ||||| | || || || ||||| |||| || | | | Sbjct 9105939 GCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTT 9105880 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||||| || || || | |||||||| ||||| || ||||| || || || || || || Sbjct 9105879 GGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTT 9105820 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| ||||| || || | ||| ||| | || || || || || || || | ||| | Sbjct 9105819 GTAGGTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAG 9105760 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||| || | || | | ||| ||| || |||| ||||||||| |||| Sbjct 9105759 CATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCCAG 9105700 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 ||| || || ||||| ||||||| || || |||| ||| |||| || |||||||||| Sbjct 9105699 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAG 9105640 Query 63851 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAATCGGAGAATGTT 63909 || || | || ||| || || | ||| | |||| | || || || || || Sbjct 9105639 GCGGTCTTTGTTTTCAAGAACGATGTCGAGGGTC-TCCTTGGAGATCATAGGGGAGTGGC 9105581 Query 63910 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 63969 | ||| ||| || || |||||||| | ||||||||||| ||||| || | ||| | Sbjct 9105580 GTCTATTCAGAGGGTTGACGTAGTTGAACAGGTCCTCCATCACCTCACTGAACACTTTCT 9105521 Query 63970 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGAT 64029 |||| |||||||| || || || ||||| || | || || || |||||||| || || | Sbjct 9105520 TTGTCTCCTTGTGCAGGTTGGAGACGGCGATCCGTGCAGCGAGGATGGCATAGTCTGGGT 9105461 Query 64030 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 64089 ||| || || ||||| || || || || ||||||||||| | || || || || | Sbjct 9105460 GTTTGGTCGTGAGGGTGGCAGCGATCTCTGCAGCCAGAGTGTCGAGCTCCACTGTGGTGA 9105401 Query 64090 CTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCG 64149 | ||| | || | || || || |||||||| | || | | | ||||| | || | Sbjct 9105400 CACCACTGTACAGACCCTGGATCACCTTCATTGTGATCTGAGTTGGATCCACGAAGTCAG 9105341 Query 64150 TGTTTAAGCCATAACATAATTTTCTA-ATACGAGACGTGATTTTATCAAACATGAC 64204 ||| | ||||| || || |||| |||||||| ||||||||||| |||||||| Sbjct 9105340 AGTTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGAC 9105286 >seq6597 Length=1954 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || |||||||| || || || |||||||| || || | ||| | Sbjct 225 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCTCTTCT 284 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||||||||| || ||||| ||||||||||| || ||||| || |||| Sbjct 285 TCAGCCAGAAGATGGAAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCCGCGAAGG 344 Query 33446 C 33446 | Sbjct 345 C 345 >seq45 Length=2253462 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || || || || || ||||| || || || || ||||||| || | ||| | Sbjct 2024577 CCTCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCT 2024636 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| |||| ||||||||| || || ||||||||||| || || |||||||| | Sbjct 2024637 TCAGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 2024696 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||| || Sbjct 2024697 CCACAATTCGCTCACC 2024712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622873030349000