Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq14 224 9e-54 seq7 125 7e-24 seq11 111 1e-19 >seq14 Length=13523219 Score = 224 bits (248), Expect = 9e-54 Identities = 964/1507 (64%), Gaps = 40/1507 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| |||| || || | || || | ||| ||| ||| Sbjct 9107162 TTGACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 9107103 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| |||| | Sbjct 9107102 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 9107043 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || ||||||||| ||| | |||||| ||| ||| ||||| Sbjct 9107042 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAC 9106983 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||| | ||||||| |||| | || | | Sbjct 9106982 AGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGACAG 9106923 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 |||| | | ||| |||| | || |||||||| ||||||||||| ||| Sbjct 9106922 CCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGCCTCCAGGGCG 9106863 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || | || || ||||| || || |||| |||||| || || ||| || | Sbjct 9106862 GCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGGCTTTCAAAG 9106803 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 || |||| ||| | || || ||||| | ||||| | || | || || |||| Sbjct 9106802 GGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTG 9106743 Query 145478 TGTTTCATGTTGC-----TCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532 || | ||||| ||| ||||| ||| | ||| | ||| || || | Sbjct 9106742 TGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGTAGTAG-----TTAATCTCTATGA 9106688 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAA-- 145590 | || |||| ||| || | || || || | | || |||| |||||||| Sbjct 9106687 TCTTGTTCAGGTTCTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAAAG 9106628 Query 145591 -CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTG 145649 ||| |||| ||| ||| | |||| ||||| || |||| |||||| || | Sbjct 9106627 TCCG---CTCGGGGGTGACGT-ACA--TGTTGAGAGCGATGGAGGCCAGATTACAGACGG 9106574 Query 145650 CCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGG 145709 | ||| ||| | | |||||| ||||| |||| ||| | ||||| |||||||||| Sbjct 9106573 CGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGG 9106514 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | || ||||| || || || || ||||||||||| ||||| ||||| |||||||||||| Sbjct 9106513 TGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTG 9106454 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG---CAAGTCCTGCGCACGCACCT 145826 || |||||| ||| | || |||| | ||| || | ||| || ||| Sbjct 9106453 TACCCGTCTCCGTCTGGGACT---CGATGACGGCGTGCCACAGCTGCTGAGCCTTCACAA 9106397 Query 145827 GCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGT 145886 ||| | || ||||| | || || | ||||||||| ||||||| | || Sbjct 9106396 CACGCTTGACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCC 9106337 Query 145887 AGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGT 145946 |||| ||| ||| ||||| |||| | ||||||||||||| ||||| | |||| | Sbjct 9106336 AGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCT 9106277 Query 145947 TGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTT 146004 ||| | || ||| ||||| || || | ||||| |||| | | || | || |||| Sbjct 9106276 CGACTCTCTTCATGAACAAGTCGGGGATCCACAAGCCGTAGAAAAGATCTCTGGCTCTTT 9106217 Query 146005 GCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCA 146064 || ||||| || |||| ||||| | || | | | | ||| |||||| Sbjct 9106216 GC--TCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCA 9106159 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGACG 146121 || || | || | ||||| ||| || | || | ||||| |||||||| || | || Sbjct 9106158 TGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCG 9106099 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 || ||||||| |||| | || |||||| | | ||| | | |||||| || | Sbjct 9106098 CGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGT-GC 9106040 Query 146182 GTTTATTCTGGTGCCGCG-GGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240 | | | | || || || | | ||| || |||||||| || || | Sbjct 9106039 CAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTG 9105980 Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCT 146298 ||||||| || ||| || | ||||| || || |||||||| ||||| || || Sbjct 9105979 ACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCT 9105920 Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAA 146358 || ||| |||||| ||||| | ||| ||| | | | || || || ||| | Sbjct 9105919 TC--ATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAG 9105862 Query 146359 CGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 ||| || |||||| || || || || || | | || || || ||||| ||| Sbjct 9105861 CGTAGGAGACGCGTGGGTGAACCACTTCTCTG-AGAGCAGGTTGTAGGTCTCGATGGCGG 9105803 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | | || | || || || | ||| || | |||||||||||| || ||||||| Sbjct 9105802 CGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCT 9105743 Query 146478 CCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAAA 146537 | ||||||| || ||||| | ||| ||| |||||| || ||| | || || | Sbjct 9105742 CGGCCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCCAGAGTCTTGAAGCCAAAGA 9105683 Query 146538 ATTTGTA 146544 | ||||| Sbjct 9105682 AGTTGTA 9105676 >seq7 Length=16146599 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||||| || | ||| | ||| ||||| || || |||||||| ||| Sbjct 1869769 CCTCCTCTCAGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1869710 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || ||||||||||| ||| |||| | |||||||||||| |||||| Sbjct 1869709 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 1869650 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| |||||| ||| | | || | || || ||| ||||| Sbjct 1869649 ATGCCCTCTTTGTCCTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACC 1869590 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || ||||| || || |||||||| Sbjct 1869589 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | ||| | ||| |||||||| || ||||||||||| || |||||| | Sbjct 1869529 CGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCG 1869470 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || | || | | ||||||||| |||||||| ||||| || Sbjct 1869469 TCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 1869410 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || |||| | ||| | || || ||| ||||| || | || | | Sbjct 1869409 TCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAAGTGATG 1869350 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || || || || || || |||||||| Sbjct 1869349 GTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 1869315 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | ||| | ||| ||||| ||||| || ||||| ||| | Sbjct 1869997 CCTCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGAC 1869938 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | | ||||||||| |||||| Sbjct 1869937 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 1869878 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || |||| | ||| | || ||| ||| ||||| Sbjct 1869877 ATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 1869818 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || |||||||| Sbjct 1869817 TCCAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 >seq11 Length=13916851 Score = 111 bits (122), Expect = 1e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || ||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 4879591 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 4879532 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 | || ||||||||||| |||||||||||||||||||| ||| Sbjct 4879531 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGT 4879491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471956600976000