Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14 508 7e-139 >seq14 Length=13523219 Score = 508 bits (562), Expect = 7e-139 Identities = 1306/1976 (66%), Gaps = 25/1976 (1%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 |||||||||||| | || || | | || || ||||| || |||| | | ||| Sbjct 9107250 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTTTTCATCTCCTCGCTCCACAGTCCTCT 9107191 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | || | || ||||| || || || | ||||| ||||| |||| || || Sbjct 9107190 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCT 9107131 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 9107130 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 9107071 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | || || || | |||| | ||| Sbjct 9107070 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGAT 9107011 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | ||| || || | || | | Sbjct 9107010 CTTTTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGG--CGTCTTCTCCCACATGTCG 9106953 Query 62398 T--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTT 62454 | || || || || || ||| | | || | ||| | ||||| ||||| || || || Sbjct 9106952 TACTGGAGGATGCCCTTGCTGACAGGAC-AGCCTTCGTATGTCTCGTAGGGGCCCAACTC 9106894 Query 62455 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62514 | || || || || |||||||| | || |||| || ||||| || ||||||| | Sbjct 9106893 GGCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGAT 9106834 Query 62515 ATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574 || || || || || |||| ||||| || ||| | || || || ||||| || Sbjct 9106833 GTTCAGCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGC 9106774 Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634 || || || || || || || || || || || | ||| || || | ||||| || || Sbjct 9106773 CAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGG 9106714 Query 62635 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 62694 | || || || ||||| ||||| || || || || || |||| || |||||| ||| Sbjct 9106713 CACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCAC 9106654 Query 62695 ATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAAC 62751 | || |||||| || ||||| || || | || ||||||| | || | Sbjct 9106653 AGACTCCAGTTTTTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTACATGTTGAGAGCGAT 9106594 Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811 || ||||||||||| ||||| ||||||| || | |||| | || || ||||| Sbjct 9106593 GGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCA 9106534 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || || || || |||||||| || | ||| ||||| || ||||| |||| || || || Sbjct 9106533 GAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 9106474 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 62930 || || || ||| | || ||||| || || |||| || || || | || | ||| | Sbjct 9106473 TTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAG 9106414 Query 62931 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATA----GTGTATAC 62986 | || ||||||| | | | ||| | | ||| ||| ||| ||||| | Sbjct 9106413 CTGCT-GAGCCTTCACAACACGCTTGACCCGCCC--CTCCTTCTCATACTGGGTGTAGAG 9106357 Query 62987 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATC 63046 || || ||||| || ||||| | |||||| || || || || ||||||||| Sbjct 9106356 CTTC--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATC 9106299 Query 63047 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 | ||||| || || || |||| ||||| || | || || ||||| | ||| Sbjct 9106298 AGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACA-AGCC 9106240 Query 63107 ATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 || || |||||||||| ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 9106239 GTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAA 9106180 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | ||| | ||||| || |||| ||| ||||| | | || || | ||||| Sbjct 9106179 GTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 9106120 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 || ||||| || | || | || ||||| || || ||||||| ||| || | | || Sbjct 9106119 GCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCC 9106060 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || || | || ||||| || | || ||||| || | | | || || | | Sbjct 9106059 GTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGC 9106000 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | || ||||| || || || ||||| | || || | || | ||| ||||| || Sbjct 9105999 CACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAAT 9105940 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 ||| || || || |||||| ||||| | || || || ||||| |||| || | | | Sbjct 9105939 GCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTT 9105880 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||||| || || || | |||||||| ||||| || ||||| || || || || || || Sbjct 9105879 GGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTT 9105820 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| ||||| || || | ||| ||| | || || || || || || || | ||| | Sbjct 9105819 GTAGGTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAG 9105760 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || | || | | ||| ||| || |||| ||||||||| |||| Sbjct 9105759 CATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCCAG 9105700 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||| || || ||||| ||||||| || || |||| ||| |||| || |||||||||| Sbjct 9105699 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAG 9105640 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAA-ATAATAGGAAAATGTT 63764 || || | || ||| | || | ||| | |||| | || ||||| | || Sbjct 9105639 GCGGTCTTTGTTTTCAAGAACGATGTCGAGGGTC-TCCTTGGAGATCATAGGGGAGTGGC 9105581 Query 63765 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 63824 | ||| ||| ||||| |||||||| | ||||||||||| ||||| || | ||| | Sbjct 9105580 GTCTATTCAGAGGGTTGACGTAGTTGAACAGGTCCTCCATCACCTCACTGAACACTTTCT 9105521 Query 63825 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGAT 63884 |||| || ||||| || || || ||||| || | || || || |||||||| || || | Sbjct 9105520 TTGTCTCCTTGTGCAGGTTGGAGACGGCGATCCGTGCAGCGAGGATGGCATAGTCTGGGT 9105461 Query 63885 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 63944 ||| || || ||||| || || || || ||||||||||| | || || || || | Sbjct 9105460 GTTTGGTCGTGAGGGTGGCAGCGATCTCTGCAGCCAGAGTGTCGAGCTCCACTGTGGTGA 9105401 Query 63945 CACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAG 64004 ||||| | || | || ||||| |||||||| | || | | | ||||| | |||| Sbjct 9105400 CACCACTGTACAGACCCTGGATCACCTTCATTGTGATCTGAGTTGGATCCACGAAGTCAG 9105341 Query 64005 TGTTTAAGCCATAACATAATTTTCTA-ATACGAGATGTGATTTTATCAAACATGAC 64059 ||| | ||||| || || |||| |||||||| ||||||||||| |||||||| Sbjct 9105340 AGTTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGAC 9105286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633556558190000