Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14 535 8e-147 seq6597 123 5e-23 seq11 123 5e-23 seq45 89.7 1e-12 >seq14 Length=13523219 Score = 535 bits (592), Expect = 8e-147 Identities = 1096/1603 (68%), Gaps = 62/1603 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||| ||||||| || | |||| Sbjct 9107243 GATCCGTTGTGAGCGATCAGCTGGTTTTTCATCTCCTCGCTCCACAGTCCT---CTCTCC 9107187 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | |||||||||||| ||||| || | ||| Sbjct 9107186 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCTGCGG 9107127 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 9107126 GTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 9107067 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| |||||||||||||||||| | ||| Sbjct 9107066 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTT 9107007 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACAT 244305 | ||| ||||||||||||| | | | | | ||| || | |||||| Sbjct 9107006 TCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTC----------CCACAT 9106957 Query 244306 GTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG-- 244363 ||| |||| || | ||||||||||| || | ||| ||||| ||| |||||| || Sbjct 9106956 GTCGTACTGGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAA 9106897 Query 244364 -TCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 ||| |||| |||||| |||||| | || ||||||||||||||||||||||| ||||| Sbjct 9106896 CTCG-GCTG--CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGAT 9106840 Query 244423 CATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 | |||||| | || | |||| || |||||| | ||||| |||||| Sbjct 9106839 CTGGATGTTCA-GCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGG 9106781 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATG- 244540 ||||||||| ||||| |||||||| || || || ||||| ||||||||||| | || Sbjct 9106780 CGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGA-CTTATCA 9106722 Query 244541 GCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-T 244599 || |||||||| ||||| |||| || || | |||||| ||||| | ||| | | Sbjct 9106721 GCCTCGGGCACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACT 9106662 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 || | | | |||| | ||||| | || | ||||| | || Sbjct 9106661 TTGGTCACAGACT-CCAGTTTTTTGAAGTCAAAA--GTCCG----CTCGGGGGTG----- 9106614 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 || || |||||| |||| | |||||| || |||||||| ||||| || | Sbjct 9106613 ----ACGTACATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATCGTCACT 9106558 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||| | || || |||||||||||||| ||||| ||||||||||| || | ||| || Sbjct 9106557 GGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTG 9106498 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||| ||| |||||||||||| ||||| |||||| | || || ||||| ||| Sbjct 9106497 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTG 9106438 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-T 244898 || ||| |||| || ||| || | | |||||| || | || | | |||| | Sbjct 9106437 GGACTCGATGACGGCGTGCCACAGCTGCTGAGCCTTCACAACAC-GCTTGACCCGCCCCT 9106379 Query 244899 CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG 244958 | ||| || ||||||| || ||| ||||| |||||| |||||| || |||| Sbjct 9106378 CCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGG 9106319 Query 244959 GGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAG 245017 ||||| ||| ||| ||||| ||| ||| || | | || ||| |||| |||||| Sbjct 9106318 GGCACT-CGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAAC 9106260 Query 245018 AGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG 245077 | |||||||||||| | | | | ||| || || |||| || ||||| ||| || ||| Sbjct 9106259 AAGTCGGGGATCCACAAGCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG 9106200 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 |||||| ||||||||| |||||||| ||||| | |||||| ||||||| ||| | ||| Sbjct 9106199 TTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCG 9106140 Query 245138 AGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATG 245197 | ||| ||||| | ||||||||| |||||||| || | | | |||| ||| Sbjct 9106139 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACT 9106080 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | || || | ||||| |||| |||||||||||| |||||| ||| | Sbjct 9106079 CTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTT 9106020 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 |||| | ||||| | || ||| | ||| || || ||||||||||||||| || Sbjct 9106019 GATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACAC 9105960 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | ||||| ||||| || |||||||| ||||||| ||||||| |||||| Sbjct 9105959 TGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAG 9105900 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| || | | | | |||||| || || || |||||||| || Sbjct 9105899 CTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAAC 9105840 Query 245438 TAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGAT-GTTGTCGCCGTGGA 245495 | | ||| ||||| | ||| |||| || |||||||| | ||| ||||| Sbjct 9105839 CA-CTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATAGCTGT-TTTGTGGA 9105782 Query 245496 TCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGG 245550 | | || ||| |||||||| ||||||| ||| || | || | || || Sbjct 9105781 TACCAACAGC-CACTCTCATGAGCATGTGCTGCGGC----CGCTCGGCCACTTTGCCGTT 9105727 Query 245551 TCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||| ||||| || |||||||| |||||| Sbjct 9105726 GATCTTCAGCAAGTAGGAACGCTCCAGAGTCTTGAAGCCAAAG 9105684 >seq6597 Length=1954 Score = 123 bits (136), Expect = 5e-23 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || |||| ||||| | || || ||||| ||||||||||| || | ||||| Sbjct 360 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 301 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||||| ||| ||| |||| || |||||||| || |||||||| ||||| || Sbjct 300 TCCATCTTCTGGCTGAAGAAGAGAGGTCTC-ATGCCCGGCCTGACCTTCTCCAACGAGCT 242 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| || |||| Sbjct 241 CATCAGCAGAGATGAGG 225 >seq11 Length=13916851 Score = 123 bits (136), Expect = 5e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| | ||| ||| ||||| |||| ||||||||| || Sbjct 4879108 CATGAAGAGGTCTGGGATCCACATGGCAAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 4879049 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| ||| ||| || || ||||| ||||||| ||||||||||||| ||| Sbjct 4879048 ACCTGTGTTCTTCTTCAACTCTAAGAACTCAAACACGTCGAAATGCCAGGGCTCCAGGTA 4878989 Query 245131 GACAGCGAGGGCGCCGGG 245148 || |||| ||| ||||| Sbjct 4878988 CACGGCGAAGGCCCCGGG 4878971 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || || || | ||| ||||| ||||||| || |||||| || Sbjct 4880992 ACCTGAAACTCTCCAGAAAGAACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATA 4880933 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 4880932 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTAGGCATGGGGGCCAAGAGCAGA 4880873 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGA 244241 |||||||| | ||| ||||| |||| Sbjct 4880872 CTGTTCCTAATGCCATGCCTGTGGA 4880848 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 4879608 CACCTCATCTTTGCTTGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 4879549 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||| | ||| || ||| ||| ||||||||||||||||||||||||| Sbjct 4879548 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATG 4879497 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 244373 GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTC 244432 || |||| |||||| | || ||||| ||||||||||||||||| |||||| |||| Sbjct 4880509 GCGAGCTCACAGCTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGAATGTTG 4880450 Query 244433 ATGTCGC-GGGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCA 244490 | || || |||||| || | || |||| | ||| | |||||| | || |||| Sbjct 4880449 A-GTAGCTGGGCCTCTGGGC-TTTCAAACGGATAACGCATAAGGATGAAGGCATCAGCCA 4880392 Query 244491 GTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 | |||||||| ||||| || || || ||||| ||| ||||||| Sbjct 4880391 GACCCTGCACTCCGATTCCAATTGGCCTGTGACGCCTGTTGGA 4880349 >seq45 Length=2253462 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || ||||| ||||||||||| || | ||||| ||||||| ||| Sbjct 2024700 GTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCCGGTTCATTCGCTGCCATCTTTTGG 2024641 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| ||| | | ||||| || || |||||||| || || || ||||||||||| Sbjct 2024640 CTGAAGAAGAGAGGATTAATGCCTGGGCTTACCTTCTCCAATGAGCTGATCAGCAGGGAT 2024581 Query 42828 GAGG 42831 |||| Sbjct 2024580 GAGG 2024577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944226764614000