Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 136 9e-27 seq31 93.3 1e-13 >seq7 Length=16146599 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | ||| ||||| ||||| || ||||||| ||| ||||| |||||||| Sbjct 1869751 ACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCC 1869692 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCC 288381 | || || || |||||||| |||||||| || ||||| ||| || ||||| ||| Sbjct 1869691 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG---TCTGGAGGGATGCCCTCTTTGTCC 1869635 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| || || || ||||| || | || || | || || || || ||||| ||| Sbjct 1869634 TGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 1869575 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || || || || |||||||| Sbjct 1869574 TTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| |||||||||||||| ||||||| || ||||| || ||| Sbjct 1869982 AGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 1869923 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| || | ||||| ||||| |||||| Sbjct 1869922 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1869863 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || ||||| || || || || | ||||| | || || || || ||||| ||| Sbjct 1869862 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTC 1869803 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || |||||||| Sbjct 1869802 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || || || | || ||||| |||||| Sbjct 1869526 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCGTCT 1869467 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || || || ||||| | ||| || | ||||| ||||| |||||| Sbjct 1869466 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1869407 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || ||||| || || || || | || || | || || || | ||||| ||| Sbjct 1869406 TGGATCTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAAGTGATGGTC 1869347 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || |||||||| Sbjct 1869346 TTACCAGTCAGGGTCTTCACAAAGATCTGCAT 1869315 >seq31 Length=6322506 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || || || || ||||| |||| ||||| | || || ||| Sbjct 2643821 CCTTCCTTATCCTGGATCTTAGCCTTGACATTTTCGATAGTGTCGCTGGGCTCAACCTCG 2643880 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 2643881 AGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCAT 2643924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179510436082950