Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq14 165 8e-36 seq7 127 2e-24 seq11 91.5 1e-13 >seq14 Length=13523219 Score = 165 bits (182), Expect = 8e-36 Identities = 501/753 (67%), Gaps = 42/753 (6%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||||||||| |||| || || | | Sbjct 9107183 AGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTG 9107124 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | ||||| ||||||||||| || || ||||| || || | Sbjct 9107123 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 9107064 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 || || ||||| |||| ||||| ||| ||||||||||| ||| | |||||||| Sbjct 9107063 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTTTC 9107005 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || ||| | ||||| | || ||||| | | | ||||||| Sbjct 9107004 CTTCAGCAGCTT---CCAGTCCCACA---GGTCGGTGGGCGTCTTCTCCCACATGTCGTA 9106951 Query 146280 ATGCATAGTGCC---GCGGAACAGGG--GGCTATTCTCGTACGATTCATAAGGACCGTCG 146334 || | |||| || || |||| | || ||||| | || || || || Sbjct 9106950 CTGGAGGATGCCCTTGCTGA-CAGGACAGCCT----TCGTATGTCTCGTAGGGGCCC--- 9106899 Query 146335 ATCTTGGC---CAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATC 146391 | || ||| ||| |||||||| || ||||| || | |||| |||||||| |||| Sbjct 9106898 AACTCGGCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC 9106839 Query 146392 ATGTAGTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGG 146449 | ||| | || ||| ||||| ||| || ||||| || || | || | |||| Sbjct 9106838 TGGATGTTCA-GCAGCTGAGCCTCTGGGCTTTCAAAGGGG-TAACGCATCAGGATGAAGG 9106781 Query 146450 CGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAG 146509 ||||||| | |||||| | |||| |||| || | ||| |||||| || ||| Sbjct 9106780 CGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAG 9106721 Query 146510 CGCCCG-CAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATT 146568 | | | || |||| |||| ||| | || ||||||||||| || || |||| || | Sbjct 9106720 CCTCGGGCACTGGG-TAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACT 9106662 Query 146569 TTCGTCAAACGATTCAGCAGGACAT---AGTCAAATGTTTTAGTTTTAACGTTGACGCAC 146625 || |||| | || || ||| | ||||||| || | | ||||| || Sbjct 9106661 TTGGTCACA-GACTC--CAGTTTTTTGAAGTCAAAAGTCCGC---TCGGGGGTGACGTAC 9106608 Query 146626 TTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGC 146685 |||||| ||||| ||||||| ||||| ||||| ||| || | | || | Sbjct 9106607 ATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCA 9106548 Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 || || |||| ||||||||||||||| |||||| |||| | ||| | |||||| || | Sbjct 9106547 ACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTC 9106488 Query 146746 TTGTTGCAGGGGTCCTTGTAGAGCATGTACGGT 146778 ||||||||| ||| ||||| |||||||||||| Sbjct 9106487 CTGTTGCAGGCGTCTTTGTACAGCATGTACGGT 9106455 >seq7 Length=16146599 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| |||| ||| | || |||||||| || || ||||| ||| | ||||| Sbjct 1869757 CGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 1869698 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| || ||||| |||||||| ||| Sbjct 1869697 TCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTG 1869638 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||| | | ||| | |||||| | |||||| || | ||| | Sbjct 1869637 TCCTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 1869578 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| ||||| ||||| |||||||| Sbjct 1869577 GTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| |||||||| ||| || ||||| ||| || ||||| || ||| Sbjct 1869967 GTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 1869908 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| | |||||| || ||||| ||||| ||||| ||| ||| || ||| Sbjct 1869907 GCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTG 1869848 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | |||||| || | || | || ||||| || || || Sbjct 1869847 ACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTCTTGCCTGTGAGGGTC 1869788 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1869787 TTCACAAAGATCTGCAT 1869771 >seq11 Length=13916851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| ||| ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 4879589 TACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 4879530 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| ||| || ||||| Sbjct 4879529 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTTCCCGTTTC 4879480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475444185686000