Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14 167 2e-36 seq7 89.7 5e-13 seq11 86.0 6e-12 >seq14 Length=13523219 Score = 167 bits (184), Expect = 2e-36 Identities = 879/1391 (63%), Gaps = 18/1391 (1%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || ||| | || | ||| | Sbjct 9105733 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGAGTGGCTGTTGGTATCCACAAAACA 9105792 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 | ||||| ||| | ||| || ||| | || | || | || | ||||| |||||| Sbjct 9105793 GCTATCGACGCCGCCATCGAGACCTACAACCTGCTCTCAGAGAAGTGGTTCACCCACGCG 9105852 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| ||| || || || ||||||| |||| || || ||||| Sbjct 9105853 TCTCCTACGCTCTTCAACGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTC 9105912 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 ||| || || ||||||||| ||| || ||||| || || | || || | || Sbjct 9105913 ACCATGAAGGATGACAGCATCGACGGCATTTATGACACGCTGAAGCAGTGTGCCCTCATC 9105972 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||| | | || || || |||||| || | | | ||| || ||| | Sbjct 9105973 TCCAAGTCAGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTAC 9106032 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 || ||||| |||| | | | |||||| | |||||||| |||| ||||| ||| Sbjct 9106033 ATTGCTGGCACCAACGGCAACTCAAACGGGCTGGTCCCCATGCTGAGAGTCTACAACAAC 9106092 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCTA 123314 | | ||| | ||||||||||||||||| | | || || | || || || || Sbjct 9106093 ACGGCGCGCTATGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTG 9106152 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAA 123374 || || |||||| |||| |||| || || | | | || |||| ||| ||| Sbjct 9106153 GAGCCATGGCACTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGGAAGGAG 9106212 Query 123375 GAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGC 123434 || | | |||| | ||| | || |||| || ||| | ||||| ||||| ||| | Sbjct 9106213 GAGCAAAGAGCCAGAGATCTTTTCTACGGCTTGTGGATCCCCGACTTGTTCATGAAGAGA 9106272 Query 123435 GTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGA 123493 || | | || | ||||| || ||||||||| | || ||| ||||| || ||| Sbjct 9106273 GTCGAGAGCAACCAGGACTGGTCTCTGATGTGTCCC-AGCGAGTGCCCCGGGCTGGACGA 9106331 Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGT 123553 | || | ||||||| || | ||| | || || ||| || || | ||| Sbjct 9106332 GTGCTGGGGGGAGGAGTTTGAGAAGCTCTACACCCAGTATGAGAAGGAGGGG---CGGGT 9106388 Query 123554 TAGTCAGGTTCCG---GCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 | | ||| | || | | ||| | | ||||| | || || || Sbjct 9106389 CAAGCGTGTTGTGAAGGCTCAGCAGCTGTGGCACGCCGTCATCGAGTCCCAGACGGAGAC 9106448 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATC-AGAGCAACT 123669 || || ||||||||||| ||||||||||||||||||||||| | ||| | | || | || Sbjct 9106449 GGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCT 9106508 Query 123670 TGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATC 123729 | || || || ||||| || || || ||| ||||||| | ||||||| | || |||| Sbjct 9106509 T-GGCACCATCAAATGCAGCAACCTCTGCACCGAAATCGTTGAATACACCAGTGACGATG 9106567 Query 123730 AAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG-GCG-- 123786 | || ||||| |||||| |||| || || | || | |||| || ||| Sbjct 9106568 AGGTCGCCGTCTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAGCGGA 9106627 Query 123787 CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAA 123846 ||||| | ||| ||| || | | || ||| | | || ||||| ||||||| | Sbjct 9106628 CTTTTGACTTCAAAAAACTGGAGTCTGTGACCAAAGTTATCGTCAAGAACCTGAACAAGA 9106687 Query 123847 TTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGAC 123906 | || || |||| | || || || || || | ||| || | ||||| | Sbjct 9106688 TCATAGAGATTAACTACTACCCAGTGCCCGAGGCTGATAAGTCCAACAAGCGCCACAGGC 9106747 Query 123907 CGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACG 123966 | | ||| | ||| | || || ||||||||||| || | || |||| || | | Sbjct 9106748 CAATTGGAATCGGCGTCCAGGGTTTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTG 9106807 Query 123967 AAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTT 124026 ||||| || || || |||| || | || || || || || || |||| ||| Sbjct 9106808 AAAGCCCAGAGGCTCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCC 9106867 Query 124027 TGGAGGCGAGCTGCGAACTTGC-GAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGC 124085 |||||||||||||||| || || | | | ||| | ||||| | |||| ||| | Sbjct 9106868 TGGAGGCGAGCTGCGAGCTGGCAGCCGAGT-TGGGCCCCTACGAGACATACGAAGGCTGT 9106926 Query 124086 CCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGG 124145 || | ||| || || | ||||||||||||||| | || || || | ||||| Sbjct 9106927 CCTGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGTGG 9106986 Query 124146 GACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTG 124205 ||||||| | | || || || | | |||||| || | ||| ||| || || Sbjct 9106987 GACTGGAAGCTGCTGAAGGAAAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTG 9107046 Query 124206 GCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCG 124265 || ||||| ||||| |||| || || || | || |||||||| ||| ||||| | Sbjct 9107047 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCC 9107106 Query 124266 TTCACTAACAA 124276 | ||| | ||| Sbjct 9107107 TACACCAGCAA 9107117 >seq7 Length=16146599 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || ||||||||||| || ||| | ||| ||| ||| Sbjct 1869979 ACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCC 1869920 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | |||| | |||||||| || || |||||||| ||||| || Sbjct 1869919 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 1869860 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||||||| | |||||| || ||||| | || ||| Sbjct 1869859 ATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTCTTG 1869800 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| || ||||| Sbjct 1869799 CCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 >seq11 Length=13916851 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || ||||| |||| ||||| ||||| || |||||||||||||| |||||||||||| Sbjct 4879462 ATCATCGAGTCACAGACAGAAACGGGAACACCATACATGCTCTACAAGGACGCCTGCAAC 4879521 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || |||| || || |||| || ||||| ||| | || || Sbjct 4879522 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATA 4879581 Query 123708 ATCGAATACA 123717 | || |||| Sbjct 4879582 GTGGAGTACA 4879591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451949383369000