Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq33 125 1e-23 seq31 122 1e-22 >seq33 Length=5239102 Score = 125 bits (138), Expect = 1e-23 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || ||||| ||||||| || || || || ||||| ||||| || ||||||||| | Sbjct 2354873 GCTGTTTTGACGATGTTGAAGCCCGTTTCTCCTCCGAACGTGCTCGGCTTCCAGTACTCA 2354932 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| ||| || ||||||||||| || ||||| |||| ||| | Sbjct 2354933 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAAGGAGAAGGGAGCACCCATCTCCACC 2354992 Query 9056 ATGCTCTCACCGAAGATGGCACCG---GGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 ||||||||||| || || || | ||||| | ||| || | | || |||||||| Sbjct 2354993 ATGCTCTCACCAAATAT---ACTGTTAGGACGAGCTTTCTCCAGCAGGACTCCAGTGTAA 2355049 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTC 9153 | || | ||| |||| ||| |||||||| | ||||| || Sbjct 2355050 AACTCCAGAGCATCGATGTCCCCATAGAGTTCCTCCAATTC 2355090 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 9715 TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGT 9774 || ||| | ||||| || | ||||| ||||| | ||||||||| |||| || ||| Sbjct 2357206 TCACCGATCATGATGAGTCTGGTGGTCTGAAAAAGCTGCTCGTCGTCCCAGGTGGGATGT 2357265 Query 9775 TCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATC 9834 ||| ||||| | || ||||| |||||||| ||||||||||| ||||||| |||||| Sbjct 2357266 TCGGCCTTGAGGATGTCACAGACTCTGTTGTGCTCTCTCAGCCACATGGTGGAGTACATG 2357325 Query 9835 ATTAAACCCGGCA 9847 | | |||||||| Sbjct 2357326 GTGAGACCCGGCA 2357338 >seq31 Length=6322506 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || |||||||| || || ||| ||||||||||||||||| ||||| ||| || Sbjct 3651508 GCAGTGTTGACGATGTCGAATCCCACGCTTCCGCCGAAGGTGCTGGGCTTCCAATACTCC 3651567 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||||||| ||| |||| | || || | ||| | || ||||||| ||| | Sbjct 3651568 GGCGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACC 3651627 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| ||||||||||||||| || | || || || | || | ||| | |||||| Sbjct 3651628 ATGGTCTCACCGAAGATGGAGTTAGGCCTGGGCTTCTCCAAGAGCAGGCCGGGGTAGAGC 3651687 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| ||||||| || || | | |||| | | || || || ||| | || ||| Sbjct 3651688 TCCACAGCATCGACGTGTCCGTACATCTCCTCCAGCACTGCGGCCATTTCCGTTTCTCCT 3651747 Score = 113 bits (124), Expect = 7e-20 Identities = 201/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || ||||| | || || || || || | | | || ||||||| | | | Sbjct 3652628 CCGTCCTGCGATCTGCTTGGTAAATGACTCCACCAGGTTGCTGATGCCGTGCTCGGTCAC 3652687 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | ||| ||||| | || || |||| ||| | || | | ||| | ||| | || Sbjct 3652688 CACAGAAGTGTTGAAGACAAACTGTTTGTAGCTGTAATCTGTTTCGTCGATGTGGAACGA 3652747 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||| | |||||| ||||||| || |||||||| | || || |||||||| Sbjct 3652748 GTCGGGCATCAGCGGGTGCCAGTGGTAGAGTGTGTTGAACTCTGAGGCAATACGGTTCTG 3652807 Query 9612 GTACT-GAAAGGC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| |||| || ||| ||| || | ||| ||||| || | |||| ||||||||| Sbjct 3652808 GTACTGGAAACGCTGGT--TGAAGAGCAGCTCTGGGTCGAACTTGAGCTTGAAGTGGTAG 3652865 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | ||| | ||| ||||||||||| || Sbjct 3652866 CCGCTCAGATGCTGCACGTAGTCCTCGATCACAATCTTAATGGTTTCACC 3652915 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || || | |||||| |||| || ||||| | | || | Sbjct 3653384 GATGAGCCGCGTGGTCTGGAAGAGTCTTTCGTCATCCCAGTCGGGGTGCACCTCCTTCAA 3653443 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 || ||||| || | |||||| || | || ||| ||||||||||||||||| | |||||| Sbjct 3653444 CACGTCGCACACGCGGTTGTGCTCCCGCATCCAAATGGTGGCGTACATCATCAGACCCGG 3653503 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | |||||| | |||| || || |||||||| Sbjct 3653504 GACCAGGCCAAACGCCTCATGGCCAACAGCAAAGCG 3653539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723641831135000