Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq14 201 1e-46 seq6597 93.3 5e-14 >seq14 Length=13523219 Score = 201 bits (222), Expect = 1e-46 Identities = 841/1305 (64%), Gaps = 42/1305 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 9107123 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 9107064 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || | || |||| Sbjct 9107063 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCC 9107004 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || | |||||| || | || || |||| | |||||||| || || Sbjct 9107003 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 9106950 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 |||||||| || | | | || | || || ||||||| || |||||| | | Sbjct 9106949 TGGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCT 9106890 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 |||| ||| |||||||||| ||||| |||| || || |||||||| || | ||| Sbjct 9106889 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTC 9106830 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGA 116256 | || ||||| | ||||| | | ||| || || || | || || | | Sbjct 9106829 AGCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAA 9106770 Query 116257 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---C 116313 || ||||| |||| |||||||| | || | | | || ||||| ||| ||| | Sbjct 9106769 CCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGC---CTCGGGC 9106713 Query 116314 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 116373 || || || | || | || || | | | || || || ||| || ||| || || | Sbjct 9106712 ACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCACA 9106653 Query 116374 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 116433 | || |||| | | |||||| | || ||| |||| ||| | || ||| Sbjct 9106652 GACTCCAGTTTTTTGAAGTCAAAAGTCCG---CTCGGGGGTGACGTACATGTTGAGAGCG 9106596 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 || || ||||||||||| || | | |||||| | | ||||| || | ||||| || Sbjct 9106595 ATGGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTG 9106536 Query 116494 CACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 116553 || | || | || |||||||| | |||| ||| || ||| |||| || || Sbjct 9106535 CAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCG 9106476 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAT 116613 || ||||| ||||| || || || ||||||||||| ||||||| || | || | ||| Sbjct 9106475 TCTTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCAC 9106416 Query 116614 A-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 | | | | | || |||| ||| | |||||||||| ||| |||| |||||||| Sbjct 9106415 AGCTGCTGAGCCT-TCACAACACGCTTGACCCGCCCCTCCTTCTCATACTGGGTGTAGAG 9106357 Query 116673 GGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT-GGACAGAAG 116730 ||||||||| || ||| |||| ||| ||||| || || | || ||||| | Sbjct 9106356 CTTCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCC-GGGGCACTCGCTGGGACACATC 9106299 Query 116731 AGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 |||||||| | || | ||| || | ||||||||| | ||| |||||||| | | Sbjct 9106298 AGAGACCA--GTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACA-AG 9106242 Query 116789 CCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 ||| |||| ||||| | | | ||| || | |||| || || || ||||| Sbjct 9106241 CCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAG 9106183 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGC 116902 ||||| | | || |||||| || |||||||||| |||| | ||| || Sbjct 9106182 GAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTT 9106123 Query 116903 GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 | | || |||||| ||||| | |||||| ||| | || | ||||| || | | Sbjct 9106122 GTTG-CCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCA 9106064 Query 116963 TACCATCAGATTGGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCTGACATCGTGG 117021 || | || | ||| || || || ||| | | ||| | ||||| | | Sbjct 9106063 GCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTT-GATCTGATGCAGCTG 9106005 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 | || || || || || || |||| ||||| | || |||| | | || || | Sbjct 9106004 ACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCA 9105945 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 || || || ||||| |||| |||| | | || ||||||||||| |||| || ||| Sbjct 9105944 TAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGC 9105885 Query 117142 CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || || || ||||||||||| || || | ||||||| ||||| Sbjct 9105884 CTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAAC 9105840 >seq6597 Length=1954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| || || |||||| ||| || ||||||||||| | ||||| Sbjct 225 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCTCTTCT 284 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | | || || |||||||||||||| |||||||| |||||| | Sbjct 285 TCAGCCAGAAGATGGAAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCCGCGAAGG 344 Query 127659 C 127659 | Sbjct 345 C 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613434154299000