Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq14 181 2e-40 >seq14 Length=13523219 Score = 181 bits (200), Expect = 2e-40 Identities = 301/433 (70%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 ||| || ||||||| ||||||||| ||||||||||| |||| |||||| | | |||| | Sbjct 9107172 CAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCT 9107113 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 |||| | | |||| | |||||||||||| | ||||| |||||| |||||||||||| Sbjct 9107112 GGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 9107053 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 || ||||| |||||| ||| | ||| |||| || || | | |||||| | Sbjct 9107052 CGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTT 9106993 Query 204358 CCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 |||||| || | |||| || ||||||||||| |||| | |||||| | || Sbjct 9106992 CCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCT 9106933 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477 ||| || | ||| | ||| ||| || || ||| ||||||||| ||| || Sbjct 9106932 GACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGC 9106873 Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA--ATCTGGCGGCCTCC 204535 ||| |||| ||||| ||||||||||||||||| | ||| | | ||| ||||| Sbjct 9106872 CTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTG--AGCCTCT 9106815 Query 204536 GTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATT 204595 | | ||||| | || || || | || |||| ||||| ||||| || |||||| Sbjct 9106814 GGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATT 9106755 Query 204596 CCCAACGGTCTGT 204608 || | || |||| Sbjct 9106754 CCAATTGGCCTGT 9106742 Score = 158 bits (174), Expect = 2e-33 Identities = 487/737 (66%), Gaps = 36/737 (5%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| |||||||| | ||| | ||| || | || | || ||| ||||| | Sbjct 9106550 TCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTC 9106491 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002 || | ||| |||| ||| ||||||| |||| |||| | || ||||| |||| || ||| Sbjct 9106490 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCG 9106431 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTT---GCTTCACGTACATCCCTTGAGA 205059 || | | | ||||| | |||||| ||| |||| || | ||| | Sbjct 9106430 ATGACGGCGTG-CCACAGCTGCTGAGCCTTCACAACACGCTTGAC---CCGCCCCTCCTT 9106375 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGG 205116 ||| || | ||||| ||| | |||| || || | || |||||| |||| || Sbjct 9106374 CTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGG 9106318 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC-ACCCTCTCCATAAACA 205175 || | ||||||||||||||||||| ||| | | || || || |||| ||| |||| Sbjct 9106317 GCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTG-CTCTCGACTCTCTTCATGAACA 9106259 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTC--TCCAAG 205233 |||| |||||||| |||||| || ||||| | ||| || || | || || ||| | Sbjct 9106258 AGTCGGGGATCCACAAGCCGTAGAAAAGATCTCTGGCTCT--TTGC-TCCTCCTTCCCTG 9106202 Query 205234 -GTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACG 205291 |||||| |||| ||||| ||| | | | ||| |||||| ||||| | ||| | Sbjct 9106201 TGTTCTTCTTCAGCTCCAG-GAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATG 9106143 Query 205292 GCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAA 205351 || | || || || |||||||| || |||||||| || ||| | | | |||| | Sbjct 9106142 GCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAG 9106083 Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC------TGTTGATGGCC 205405 |||| |||||| || ||||| ||||| | | | ||||| |||| ||| | | || Sbjct 9106082 ACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCC 9106023 Query 205406 GAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATC 205465 | || | || | | | || ||| |||| || || |||| |||||| ||| Sbjct 9106022 G----TT--GATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATG 9105969 Query 205466 TGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACC 205525 |||| |||| | ||| ||| || ||||| ||||| || ||| || || | | Sbjct 9105968 AGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGC 9105909 Query 205526 AGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCG 205585 || |||| | ||||| | |||||| || |||| ||||||||| || ||| Sbjct 9105908 AGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCG 9105849 Query 205586 TGGCTGAAGCGCTTCTC 205602 ||| |||| | |||||| Sbjct 9105848 TGGGTGAACCACTTCTC 9105832 Score = 102 bits (112), Expect = 1e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || || || ||||| ||||| Sbjct 9107626 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGTT 9107567 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||| ||||||||| | |||||| || || || ||||| || | ||||||| Sbjct 9107566 CATGGACTGGCTCTGGTCGATGTA-GGCGCCTCGGTCAGCAGCCATCTTCAGTATGGTCT 9107508 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| || || Sbjct 9107507 TCTGGGAGATTTCCCACACGGTTTT 9107483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795060526834000