Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 161 1e-34 seq6597 96.9 3e-15 >seq7 Length=16146599 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || |||||| ||| Sbjct 1869543 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 1869602 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | ||||||| ||||||||||| || || | ||||| Sbjct 1869603 GACACCATTGAAAATGTTAAGGCCAAAATCCAGGACAAAGAGGGCATCCCTCCAGACCAG 1869662 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| |||| ||||| ||| |||||||||| Sbjct 1869663 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 1869722 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || ||| |||| ||||| ||||||| || Sbjct 1869723 ATCCAGAAAGAGTCCACCCTCCATCTGGTCTTGCGTCTGAGAGGAGG 1869769 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || || || |||||||| | || |||||| || Sbjct 1869312 AAGATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCC 1869371 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | |||| || |||| || || || || || || | ||| Sbjct 1869372 AGTGACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGAC 1869431 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| |||| || ||||| |||||||| |||| |||||||| || ||| Sbjct 1869432 CAGCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCAGATTAC 1869491 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || || ||| | ||||| || ||||||| || Sbjct 1869492 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGG 1869541 >seq6597 Length=1954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| || |||| |||||| |||| Sbjct 852 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAACACGTGAGAGATG 911 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | | ||| | || |||| |||||||| || ||||| |||||||| ||| Sbjct 912 AAGTACCTCTCCTCCTCCTTCAGAGACTCCCAGTGCTGCAGATCCTTTGACAGGTCGACC 971 Query 133399 TCCTCGAC 133406 | | |||| Sbjct 972 TGCGCGAC 979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| |||||| |||||||| | ||||||||||||||| || || Sbjct 642 GTACGTGTCGATGAGAAGGCTATACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAA 701 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || ||||| |||||| |||||||||||| || | || ||||| ||| Sbjct 702 ACCATAGAAACACCGGGCCTCGGTCACCTGCACTTCCTGCGTAAAGCGCTCCACC 756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||||| |||||| ||| |||| |||||||||||| || | || | Sbjct 225 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCTCTCTTCT 284 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| ||||| || || ||||||| ||||| || |||||||| | Sbjct 285 TCAGCCAGAAGATGGAAGCGAACGAACCAGAGAAGAAGATTCCCTCCACTGCCGCGAAGG 344 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 345 CCACCACCCGCTCTCC 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500113248176000