Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq15 264 9e-65 seq21 107 1e-17 seq11 102 6e-16 >seq15 Length=13389401 Score = 264 bits (292), Expect = 9e-65 Identities = 942/1460 (65%), Gaps = 18/1460 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||| || ||||| || |||||||| | || || || || || | || || || Sbjct 1598097 GCAGACACGTTCAGAATTCCGTTGGCATCAATGTCGAAAGTTACCTCCACCTGCGGTACG 1598156 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 |||| ||||||| ||||| || | | | ||| | ||||| || || || || Sbjct 1598157 CCTCGGGGAGCAGGAGGGATGCCAGCGAGCTCAAACTTGCCCAGGAGGTTGTTGTCCTTG 1598216 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || || ||||| | | || || || ||| || |||||||| || Sbjct 1598217 GTCATGGCTCTCTCGCCCTCATACACCTGAATTAGCACACCAGGRTGGTTATCTGAGTAG 1598276 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || | ||||| ||| || || || |||||||| | | || | | || Sbjct 1598277 GTGGWGAAGA-TCTGGGTTTGCTTGGTGGGGATAGTTGTGTTGCGTTTGATCAGAGGTGT 1598335 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||||| || || || | ||| ||||| || |||| || || | || | | Sbjct 1598336 CATGACTCCACCAGCAGTCTCAATACCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAG 1598395 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 || ||| | || || ||| | ||| | || ||||| || || | || |||||||| Sbjct 1598396 ATCTTGGACGTTCTCCGAAGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCACCATA 1598455 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 517676 || ||||||||||| || || | | | | || |||| | | ||||| || |||| ||| Sbjct 1598456 AGCCACAGCTTCATCTGGGTTGATACTCTTGTTCAGTTCTCTGCCATTYAAGAAATCTTG 1598515 Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 ||||| || | | || ||||| | | || || ||||| | || |||||||| | Sbjct 1598516 CAAGAACTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCATGGA 1598574 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 || || ||||||| || ||||| || |||| || || || || || | | Sbjct 1598575 TCTTGGACTTATCCATCTTGGAATCTTGTAGGGCTTTCTCCACTGGCTCCAGTGTTCCCC 1598634 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 517854 | || | ||||| || || || || || || || || || | || || || Sbjct 1598635 TGAAGAGATCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGGTGTAGAAGTC 1598692 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 || || || |||| ||| || | |||||| | | || || || || || | | Sbjct 1598693 GATGCCCTCAAACAGAGAGTCYATTTCAATGCTGGCCTGGGTGCTTGAGGACAGGGTCCT 1598752 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAA 517972 || || | ||||| ||||| | ||||| | | ||| | || ||| | | | Sbjct 1598753 CTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCTAACTGCTCT--CTTATTTTGGCTGATG 1598810 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 ||| | || || ||||| || || || || | | | || | ||||| ||||| Sbjct 1598811 TCTTTCTTGTACTTTCTTTTAAATTCCTCGAGGAAGTGACTGACCATCCGATTGTCAAAG 1598870 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || || || || | | || | ||||| || ||| |||| | || | || || ||| Sbjct 1598871 TCCTCCCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCAAAGATGCCGTCCTCA 1598930 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | | || | | || ||| ||| || ||||| | |||||| || || || || Sbjct 1598931 ATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACYTTGCGC 1598990 Query 518153 TCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 ||| |||| || |||||| | || || |||| || || || || ||||| || Sbjct 1598991 TCTCC-TCTT--TTACCTTTATCTAAGCCGTAGGCAATCGCTGCTGCTGTGGGTTCGTTG 1599047 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || |||| || ||| ||||||| || ||| ||||| ||||||||||| || || Sbjct 1599048 ATGATCCTCAGAATATTCAGACCAGAGATCACTCCAGCATCCTTAGTGGCTTGCCTCTGA 1599107 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 ||||| || ||||| || || || || || || |||| | || | || || | || Sbjct 1599108 GAATCATTGAAATAAGCTGGCACTGTGATGACTGCATTTGAAACCTTTTGTCCCAGGTAG 1599167 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || || | | ||||||||| | | |||||| || |||| ||| ||| | | Sbjct 1599168 GCCTCAGCTATCTCCTTCATTTTAACCAGGACCATTGACGAGATTTCTTCAGGGTAGAAG 1599227 Query 518390 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 518449 ||||| ||| || ||| || | || | || || | || | || || Sbjct 1599228 GCCTTGGTTTCGCCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCACTGATCACC 1599287 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 || || ||||| |||||| || || || || | ||||||||| | ||| || ||| Sbjct 1599288 TTGAAAGGCCAAAGTTTCATGTCGGACTGGACGATGGAGTCATTAAACTTTCTTCCTATT 1599347 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 | ||| || || ||||| || |||||||| || || || ||| | || | ||||| ||| Sbjct 1599348 AGTCGCTTGGCYTCAAATATTGTATTGGTGGGGTTCATGGCAACCTGGTTCTTGGCAGCA 1599407 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||||||| || ||||| || ||||| | ||||| |||||||| | || || Sbjct 1599408 TCTCCAATGAGCCTCTCTGTGTCYGTAAAGGCCACATAGCTGGGAGTTGTCCTGTTGCCC 1599467 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 || || || ||||| || || ||||| |||| ||| | || || |||||| | | || Sbjct 1599468 TGGTCGTTGGCAATGATCTCCACTTTGCCATGTTGGAAAACCCCAACACAAGAATAGGTG 1599527 Query 518690 GTTCCTAAATCAATACCAAT 518709 ||||| |||||||| ||||| Sbjct 1599528 GTTCCCAAATCAATGCCAAT 1599547 >seq21 Length=10546925 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| || ||||| |||| || |||||||| || ||||| || || | || ||| Sbjct 2489817 TTTTTATCCAGGCCATAAGCAATGGCTGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 2489876 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| ||| ||||||||||||||||| | || || || || || || Sbjct 2489877 TTGAGCCCAGCAATGACTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAGTAA 2489936 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || || || |||| Sbjct 2489937 GCAGGAACCGTGATGACTGCAT 2489958 >seq11 Length=13916851 Score = 102 bits (112), Expect = 6e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || ||| | |||| ||||||||||||||||||||| Sbjct 13376599 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTTTTGGCTGCATCTCCAATCAGCC 13376540 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 13376539 TCTCTGTATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 13376480 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || |||||||| |||| || | ||||| ||||| | || || || | ||||| Sbjct 13376479 TGATCTCAACTTTTCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCGAGATCAA 13376420 Query 518703 TACCAA 518708 |||||| Sbjct 13376419 TACCAA 13376414 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || ||| | || | ||||||||||||||||||||| Sbjct 13367107 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGGTTTTTGGCTGCATCTCCAATCAGCC 13367166 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || | ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 13367167 TCTCGGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 13367226 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || |||||||| |||| || | ||||| ||||| | || || || | ||||| Sbjct 13367227 TGATCTCAACTTTTCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCGAGATCAA 13367286 Query 518703 TACCAA 518708 |||||| Sbjct 13367287 TACCAA 13367292 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| || | |||||||||||||||||||| || || | ||||||| Sbjct 13366319 TTCTTGTCCAAACCATAGGCGATGGCAGCAGCAGTTGGTTCATTGATGATACGCAAAACA 13366378 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || | |||||||| || ||||| || | || || || || || || Sbjct 13366379 TTGAGGCCAGAGATAGTGCCTGCATCCTTGGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 13366438 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 13366439 GCGGGCACTGTGACTACAGCAT 13366460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780349738124650