Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq15 325 5e-84 seq11 178 2e-39 seq21 134 2e-26 >seq15 Length=13389401 Score = 325 bits (360), Expect = 5e-84 Identities = 1038/1590 (65%), Gaps = 32/1590 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || ||| | || ||||| || ||||| || ||||||| ||||| || | ||| Sbjct 1597977 TCGTCATCAGCCTTGTACTTCTCAGCATCCTGTACCATCTGCTCAATCTCCTGTTTGCTG 1598036 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| || || || || || | ||| || | | || || || Sbjct 1598037 AGGCGGCCCTTGTCATTTGTGATGGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCGACA 1598096 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||| || || ||||||| ||||| |||| | | || ||| | Sbjct 1598097 GCAGACACGTTCAGAATTCCGTTGGCATCAATGTCGAAAGTTACCTCCACCTGCGGT--A 1598154 Query 6749 CCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 | |||||| | | | || || || | | ||||| | || || | |||| ||| Sbjct 1598155 CGCCTCGGGGAGCAGGAGGGATGCCAGCGAGCTCAAACTTGCCCAGGAGGTTGTTGTCCT 1598214 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTG 6866 | | | | | || || ||||| || | |||| ||| |||| || |||||| Sbjct 1598215 TGGTCATGGCTCTCTCGCCCTCATACACCTGAATTAGCACACCAGGRTGGTTATCTGAGT 1598274 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||||| || || ||| | || || || || || | || | || | Sbjct 1598275 AGGTGGWGAAGATCTGGGTTTGCTTGGTGGGGATAGTTGTGTTGCGTTTGATCAGAGGTG 1598334 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | ||||| ||| || | || |||||||| || | |||||||| || | || Sbjct 1598335 TCATGACTCCACCAGCAGTCTCAATACCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCA 1598394 Query 6987 GGTCTTGAACAGATTCGTTCCCT----TCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | ||||| || ||| ||| |||||| | | ||| || || ||||| | || Sbjct 1598395 GATCTTGGACG--TTC--TCCGAAGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCA 1598450 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 || || || || || ||||| ||||| || | || ||||||||| | || || || || Sbjct 1598451 CCATAAGCCACAGCTTCATCTGGGTTGATACTCTTGTTCAGTTCTCTGCCATTYAAGAAA 1598510 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 || || | | || ||||| || |||| ||| || ||||| |||| ||||||||| Sbjct 1598511 TCTTGCAAGAACTTCTGGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCA 1598570 Query 7163 TTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 | | || || ||||| ||||| || ||| | || | ||| || || || |||| | Sbjct 1598571 TGGATCTTGGACTTATCCATCTTGGAATCTTGTAGGGCTTTCTCCACTGGCTCCAGTGTT 1598630 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 | ||| | || || |||||||| ||||| | || ||||| || ||||| Sbjct 1598631 CCCCTGAAGAGATCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGTGATGGAGGTGTAGAAG 1598690 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | ||| || | | || || ||||||||| | | || | | || || | || Sbjct 1598691 TCGATGCCCTCAAACAGAGAGTCYATTTCAATGCTGGCCTGGGTGCTTGAGGACAGGGTC 1598750 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 | ||| || | |||||| || || || | | | || || | | || | || Sbjct 1598751 CTCTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCTAACTGCTCTCTTATTTTGGCTGATG 1598810 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT--CGA 7460 |||||||| | || | |||||| || || |||||| | | | || ||| | | | Sbjct 1598811 TCTTTCTTGTACTTTCTTTTAAATTCCTCGAGGAAGTGACTGACCA-TC-CGATTGTCAA 1598868 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || || ||||| | |||||| || || || || ||||| || |||||||| || | | Sbjct 1598869 AGTCCTCCCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCAAAGATGCCGTCCT 1598928 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| | | | || || ||||| || || ||||| || ||||| ||||| || || Sbjct 1598929 CAATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACYTTGC 1598988 Query 7581 TATCGTCGTCTTTGTTCTT-ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 || || ||||| ||| ||| | ||||| || || || || || || ||||| || Sbjct 1598989 GCTC-TCCTCTTTTACCTTTATCTAAGCCGTAGGCAATCGCTGCTGCTGTGGGTTCGTTG 1599047 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || || | ||| ||||| |||| || | | ||||| || || ||||| | || Sbjct 1599048 ATGATCCTCAGAATATTCAGACCAGAGATCACTCCAGCATCCTTAGTGGCTTGCCTCTGA 1599107 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| || || || || || || || | ||| || | | || || | || || || Sbjct 1599108 GAATCATTGAAATAAGCTGGCACTGTGATGACTGCATTTGAAACCTTTTGTCCCAGGTAG 1599167 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || || || |||||||| || ||||| || || || ||||||| || Sbjct 1599168 GCCTCAGCTATCTCCTTCATTTTAACCAGGACCATTGACGAGATTTCTTCAGGGTAGAAG 1599227 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC-AGCACCGGGGAT 7878 || ||||| || ||| | || || | || |||| || |||| | ||| | || Sbjct 1599228 GCCTTGGTTTCGCCTTTATACTCCACCTGAACTTTGGGCTT-TCCGTTATCACTG---AT 1599283 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG--TCCGAAAACTTTCTT 7936 ||||| | | |||| |||||| ||| ||||| | ||| || |||||||||| Sbjct 1599284 CACCTTGAAAGGCCAAAGTTTCATGTCGGACTGGAC--GATGGAGTCATTAAACTTTCTT 1599341 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || ||||| || ||||| | ||| || ||||||||||||| |||||||| Sbjct 1599342 CCTATTAGTCGCTTGGCYTCAAATATTGTATTGGTGGGGTTCATGGCAACCTGGTTCTTG 1599401 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGT 8055 || || || || || || | || | | || ||||| || || || | |||| || || Sbjct 1599402 GCAGCATCTCCAATGAGCC--TC-TCTGTGTCYGTAAAGGCCACATA-GCTGGGAGTTGT 1599457 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 | || || |||||||| ||||| || || || | | | ||| | || || || || Sbjct 1599458 CCTGTTGCCCTGGTCGTTGGCAATGATCTCCACTTTGCCATGTTGGAAAACCCCAACACA 1599517 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||||| || ||||| |||||||| || || Sbjct 1599518 AGAATAGGTGGTTCCCAAATCAATGCCAAT 1599547 >seq11 Length=13916851 Score = 178 bits (196), Expect = 2e-39 Identities = 369/544 (68%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||||||||| || | || || || || || || || || Sbjct 13365638 GCTCCGTAGGCCACAGCTTCATCGGGGTTGATGCTCTTGTTGAGCTCCTTTCCATTGAAG 13365697 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || ||||| || || || |||||||||| || || Sbjct 13365698 AAGTCCTGAAGCAGCTTCTGGATCTTGGGGATACGGGTGGAGCCACCGACCAGGACAATG 13365757 Query 7160 TCATTCA-CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 |||| | || || || ||| ||||| | || || || | || || ||||| || | Sbjct 13365758 TCATGGATCTGTCCCTT-ATCCATCTTGGCATCACGGAGAGACTTCTCCACAGGGTCTAG 13365816 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 |||||| | ||| | || |||||||| || || | ||| ||||| || || Sbjct 13365817 TGTGCCACGGAAGAGGTCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTA 13365876 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 || ||||| || || || | || || ||||| ||| | | || | | ||||| || Sbjct 13365877 AAAGTCAACTCCCTCATACAGGGAGTCGATTTCGATGCTGGCCTGGGTGCTGGAAGACAA 13365936 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || |||||||| | |||||| || || || | |||||| | || | | ||| || Sbjct 13365937 TGTGCGCTTTGCCCTCTCACAAGCGGTGCGCAGACGACGGACAGCTCTCTTGTTGTCGCT 13365996 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGA 7455 || |||||||| | || || || ||||| | |||||| | || | | | | Sbjct 13365997 GATGTCTTTCTTGTACTTGCGCTTGAACTCAGCGATGAAGTGGTTGACCATGCGGTTG-- 13366054 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||| ||||| | || ||||| || ||||| | ||||| |||||||| || Sbjct 13366055 -TCGAAATCTTCCCCACCAAGATGAGTATCTCCAGCGGTGGACTTGACCTCAAAGATGCC 13366113 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | || | || |||||||| || |||||||| || || || ||||| || Sbjct 13366114 ATCCTCAATGGTCAAGATGGACACATCAAAGGTGCCACCACCAAGATCGAAGATGAGGAC 13366173 Query 7576 GTTC 7579 |||| Sbjct 13366174 GTTC 13366177 Score = 174 bits (192), Expect = 2e-38 Identities = 366/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| ||||| || | || || || || || || || || Sbjct 13377790 GCTCCGTAGGCCACAGCTTCATCAGGGTTGATGCTCTTGTTGAGCTCCTTTCCATTGAAG 13377731 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || || || || || || |||||||||| || || Sbjct 13377730 AAGTCCTGGAGCAGCTTCTGGATCTTGGGAATACGGGTGGAGCCACCGACCAGGACAATG 13377671 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || ||||| | ||| || || | || || ||||| || | Sbjct 13377670 TCATGGATCTGAGACTTGTCCATCTTGGCGTCACGGAGAGACTTCTCCACAGGGTCTAGT 13377611 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||| | ||| | || |||||||| || || | ||| ||||| || || Sbjct 13377610 GTGCCACGGAAGAGGTCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTAA 13377551 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || ||||| || || || | || || ||||| ||| | | || | | ||||| || Sbjct 13377550 AAGTCAACTCCCTCATACAGGGAGTCGATTTCGATGCTGGCCTGGGTGCTGGAAGACAAT 13377491 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | |||||| || || || | |||||| | || | | ||| || Sbjct 13377490 GTGCGCTTTGCCCTCTCACAAGCGGTGCGCAGACGACGGACAGCTCTCTTGTTGTCGCTG 13377431 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| | || || || ||||| | |||||| | || | | | | Sbjct 13377430 ATGTCTTTCTTGTACTTGCGCTTGAACTCAGCGATGAAGTGGTTGACCATGCGGTTG--- 13377374 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| ||||| | || ||||| || ||||| | ||||| |||||||| || Sbjct 13377373 TCGAAATCTTCCCCACCAAGATGAGTATCTCCAGCGGTGGACTTGACCTCAAAGATGCCA 13377314 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || | || |||||||| || |||||||| || || || ||||| ||| Sbjct 13377313 TCCTCAATGGTCAAGATGGACACATCAAAGGTGCCACCACCAAGATCGAAGATGAGGACG 13377254 Query 7577 TTC 7579 ||| Sbjct 13377253 TTC 13377251 Score = 86.0 bits (94), Expect = 8e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || | ||| || ||||| || || || ||||||||||| || ||||| || ||| Sbjct 13366319 TTCTTGTCCAAACCATAGGCGATGGCAGCAGCAGTTGGTTCATTGATGATACGCAAAACA 13366378 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||||| ||||| | ||||| || || || || || || || || || ||||| Sbjct 13366379 -TTGAGGCCAGAGATAGTGCCTGCATCCTTGGTGGCCTGGCGCTGGGAGTCATTGAAGTA 13366437 Query 7714 GGCCGGGACCGTTACGACCGC 7734 ||| || || || || || || Sbjct 13366438 GGCGGGCACTGTGACTACAGC 13366458 >seq21 Length=10546925 Score = 134 bits (148), Expect = 2e-26 Identities = 359/544 (66%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| ||||| || | ||||| || || | || || Sbjct 2489183 GCACCATAAGCCACAGCCTCATCAGGGTTGATGCTCTTATTGAGATCGCGGTCATTGAAG 2489242 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | |||||| || ||||||||||| || |||||||||| || || Sbjct 2489243 AAGTCCTGCAGTAGCTTTTGAATCTTGGGGATTCGTGTGGAGCCACCGACCAGGACAATG 2489302 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | | || || || || | || | || | || || ||||| || | Sbjct 2489303 TCATGGATCTGGGCCTTGTCCATTTTGGCATCCCTCAGGGCCTTCTCCACAGGCTCGAGG 2489362 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | |||||||| ||| | || || |||||||| || | ||| || || || ||| Sbjct 2489363 GTTCCACGGAACAGGTCTGCATTTAGCTCTTCAAAACGAGCCCTGGTGATTGAAGTGTAG 2489422 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG--TTTGTGCCGTCGAAGATA 7337 ||||| || ||| | | |||||||||||||||| | | | |||| | | || | Sbjct 2489423 AAATCCGTTCCTTCGAAGAGCGAATCAATTTCAATGCTGGCCTGGGTGCTGCTG--GAGA 2489480 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || || || || |||||||| || || || | ||| || | || ||| ||| | Sbjct 2489481 GGGTGCGTTTAGCACGCTCACATGCGGTGCGCAGACGTCGCACAGCCCGCTTGTTGTTGT 2489540 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCG 7454 || || || || || || || ||||| || ||||| || || | | | | Sbjct 2489541 TGATCTCCTTTTTGAACTTGCGCTTGAACTCACCAATGAAGTGGTTGACCATGCGGTT-- 2489598 Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 || || || ||||| |||||||| || || || || || | ||||| |||||||| | Sbjct 2489599 -GTCAAAGTCCTCACCGCCCAAGTGAGTGTCACCGGCCGTGGACTTGACCTCAAAGATGC 2489657 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | | ||||| | | | || |||||||| |||||||| || |||||||| ||||| | Sbjct 2489658 CATCCTCAATAGTCAGGATTGACACATCAAAAGTACCACCCCCGAGGTCAAAGATGAGGA 2489717 Query 7575 CGTT 7578 | || Sbjct 2489718 CATT 2489721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635057179501000