Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 100 3e-16 seq10 95.1 1e-14 seq38 93.3 5e-14 seq25 93.3 5e-14 seq22 93.3 5e-14 seq14 93.3 5e-14 seq9 93.3 5e-14 seq45 86.0 7e-12 seq28 86.0 7e-12 >seq11 Length=13916851 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| || || | | ||||||||||||| ||||| || |||||||| Sbjct 4880960 GTAGATGTTGCTGGTGTACGGCTCAATAGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 4880901 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 |||||| |||||||| |||| ||| |||||||| Sbjct 4880900 AGCTGTAGGCATGGGGGCCAAGAGCAGACTGTT 4880868 >seq10 Length=14303885 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/76 (88%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 8086794 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 8086853 Query 136776 -TGGGAACAGCTTTTA 136790 || |||| ||||| Sbjct 8086854 CTGACCACAGGTTTTA 8086869 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 8111565 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 8111623 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 8119306 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 8119364 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 5368091 TAGCTCAGTTGGTRAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 5368149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| Sbjct 8121336 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCCTGGGTTCGATCCCCGT 8121394 >seq38 Length=3905546 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 3448745 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 3448803 >seq25 Length=8751422 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1774139 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1774081 >seq22 Length=10337708 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1465642 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1465584 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||| Sbjct 1462285 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCAATCCCCGT 1462227 >seq14 Length=13523219 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 11950223 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 11950281 >seq9 Length=14610588 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 4578510 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 4578568 >seq45 Length=2253462 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 119517 TCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTT 119576 ||||||| ||| |||||||| |||| ||| |||||||| | |||||| ||||| Sbjct 2024579 TCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCTTC 2024638 Query 119577 AGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCG 119636 ||||||||||||||| || || || |||||||| ||||||||| || ||||| Sbjct 2024639 AGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAGCC 2024698 Query 119637 AATAGACGCTCA 119648 | | |||||| Sbjct 2024699 ACAATTCGCTCA 2024710 >seq28 Length=7555886 Score = 86.0 bits (94), Expect = 7e-12 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 136715 TATAG-CTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 1768200 TATAGGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTTGCGGGTTCGATCCCC 1768259 Query 136774 GT 136775 || Sbjct 1768260 GT 1768261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588905875045000