Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 181 1e-40 seq11 104 3e-17 seq45 82.4 9e-11 >seq14 Length=13523219 Score = 181 bits (200), Expect = 1e-40 Identities = 896/1401 (64%), Gaps = 48/1401 (3%) Strand=Plus/Minus Query 105842 TTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACA 105901 ||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 9107216 TTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACG 9107157 Query 105902 ATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAG 105961 ||| ||||||||| | ||| || | |||||||| | ||||||| || | | Sbjct 9107156 ATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATG 9107097 Query 105962 CATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGA 106021 | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 9107096 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGG 9107037 Query 106022 CTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-G 106080 ||||| | | || | | ||| |||||| || | | |||||| | | | Sbjct 9107036 CTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCACAGGTCG 9106977 Query 106081 CTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACCC 106138 | || || || ||||||| || | || || | |||||| ||| ||| | || Sbjct 9106976 GTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACA--GGACAGCCT 9106920 Query 106139 TCAAATGTCTCATAGGAACCT---TGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGAT 106195 || ||||||| |||| || | |||| |||| || |||||||||||||||| Sbjct 9106919 TCGTATGTCTCGTAGGGGCCCAACTCGGCT---GCCAGCTCGCAGCTCGCCTCCAGGGCG 9106863 Query 106196 GCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAAT 106255 |||| || ||||| |||||||| | |||| | || || || ||||| Sbjct 9106862 GCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGGCTTTCAAAG 9106803 Query 106256 GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTG 106315 | ||| || || || || | || || | ||| || || || | ||||| || ||| Sbjct 9106802 GGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTG 9106743 Query 106316 TGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACT 106372 || ||| | || ||||| ||| ||| || || || | || | || |||| Sbjct 9106742 TGGCGCTTGTTGGACTTAT---CAGCCTCGGGCACTGGGTAGTAGTTAATCTCTATGATC 9106686 Query 106373 CGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTG 106432 ||| || || ||| | || || || | | ||||||| | |||||||| Sbjct 9106685 TTGTTCAGGTTCTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAAAGTC 9106626 Query 106433 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 106492 || ||| |||| ||| | || ||||| || |||| ||| || || || | Sbjct 9106625 CG---CTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCGACC 9106569 Query 106493 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCC 106552 ||||| | | ||||| || | ||||| || || | |||| | || || || || Sbjct 9106568 TCATCGTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCA 9106509 Query 106553 AAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 106612 | ||||| |||||| ||||| ||||||| || || ||||| |||||||| || || ||| Sbjct 9106508 AGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCC 9106449 Query 106613 GTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT 106671 ||||||||||| |||| || | || | ||||| | | | | || |||| || Sbjct 9106448 GTCTCCGTCTGGGACTCGATGACGGCGTGCCACAGCTGCTGAGCCT-TCACAACACGCTT 9106390 Query 106672 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 106730 | |||| |||||| ||| |||| |||||||| ||||||||||| ||| | || | Sbjct 9106389 GACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGCACT 9106331 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAAC 106788 || || || || || | ||||| | |||||||| | || | ||| || Sbjct 9106330 CGTCCAGCCCGGGGCACTCGCTGGGACACATCAGAGACCA--GTCCTGGTTGCTCTCGAC 9106273 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 106848 | ||||||||| | ||| || ||||||| | | || |||||||| | ||| Sbjct 9106272 TCTCTTCATGAACAAGTCGGGGATCCACAAGCCGTAGAAAAGATCTCTGGCTCTTTGCTC 9106213 Query 106849 TTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 || | ||| ||| || | | ||| ||||| || | | || ||||||||||| Sbjct 9106212 CTCCTTCCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCT 9106154 Query 106908 CAAGATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGC 106960 | || || | |||| | || ||| | | ||||| || | ||||||||| Sbjct 9106153 CCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACATAGCGC 9106098 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || ||| ||| | || | ||||| || | | || | ||| | || || || || Sbjct 9106097 GCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCA 9106038 Query 107021 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 107077 ||| || | | | ||| | || | || || || || || ||||| Sbjct 9106037 GCAAT-GTAGCTCCCCGTTGATCTGATGCAGC--TGACCGCCACGCCGATTCCTCCAGCT 9105981 Query 107078 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 107137 |||| ||||| | ||||||| | | || || |||| || |||| ||| ||| ||| Sbjct 9105980 GACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCC 9105921 Query 107138 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 107197 || ||| || |||||||| ||||||| ||| || || || || || |||||||| Sbjct 9105920 TTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGC 9105861 Query 107198 GTTGGTGTTGCGTGAATGAAC 107218 || || | ||||| ||||| Sbjct 9105860 GTAGGAGACGCGTGGGTGAAC 9105840 >seq11 Length=13916851 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || ||||||||| | || ||||| |||| ||| || || || || Sbjct 4879605 CTCATCTTTGCTTGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 4879546 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || || Sbjct 4879545 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTTCC 4879486 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||| || |||||||||| || || || | ||||| Sbjct 4879485 CGTTTCTGTCTGTGACTCGATGATGGCATGCCACA 4879451 >seq45 Length=2253462 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | || || ||||| |||||| || || ||||| | || | ||||| Sbjct 2024577 CCTCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCT 2024636 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| |||| | || || |||||| |||||||||||||| ||||||||| ||||| | Sbjct 2024637 TCAGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAG 2024696 Query 117413 CAAAAAGGCGCTC 117425 | | || ||||| Sbjct 2024697 CCACAATTCGCTC 2024709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589910555411000