Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 145 2e-29 seq11 84.2 5e-11 >seq7 Length=16146599 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | ||| || || || || ||||||||||| || || ||||| |||| ||||| Sbjct 1869764 TCTCAGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGT 1869705 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || |||||||| || || || ||||||||||| ||||| Sbjct 1869704 GCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCC 1869645 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || ||||| ||| || || ||||||||||| ||| || || || Sbjct 1869644 CTCTTTGTCCTGGATTTTGGCCTTAACATTTTCAATGGTGTC---ACTGGGCTCGACCTC 1869588 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| ||||| || || | ||||| Sbjct 1869587 CAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||||||||| |||||||| |||| || || | |||||||| Sbjct 1869979 ACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCC 1869920 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| ||||| |||||||| || || || Sbjct 1869919 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 1869860 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||||| |||||||||||||| Sbjct 1869859 ATCTTAGCTTTGACATTCTCAATGGTGTC 1869831 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || |||||||| | || || | || ||||| Sbjct 1869523 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCGTCTTCC 1869464 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || | || ||||| ||||| |||||||| || || || Sbjct 1869463 AGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 1869404 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||||| |||||||||||||| Sbjct 1869403 ATCTTAGCTTTGACATTCTCAATGGTGTC 1869375 >seq11 Length=13916851 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || ||||| || | || || ||||| ||||||||||| ||||| || || || | Sbjct 8385147 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8385088 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| |||||||||||||| ||| || || |||||||| | ||||| || ||| Sbjct 8385087 TTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 8385031 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 8385030 AGGGTCTTCACGAAGATCTGCAT 8385008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109346199905675