Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq15 192 5e-43 seq21 127 2e-23 seq11 95.1 1e-13 >seq15 Length=13389401 Score = 192 bits (212), Expect = 5e-43 Identities = 451/680 (66%), Gaps = 4/680 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || ||||| || ||||| || | | || || || | || || ||| |||||| | Sbjct 1598773 ACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCAAGCACCCAGGCCAGCATTGAAATR 1598714 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | |||||||| || || | | || | || | ||||| ||||| || Sbjct 1598713 GACTCTCTGTTTGAGGGCATCGACTTCTACACCTCCATCACAAGGGCACGCTTTGAGGAG 1598654 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | || |||||||| || |||| | || ||||| || ||| || |||||| Sbjct 1598653 CTCAACTCAGATCTCTTCAGGGGAACACTGGAGCCAGTGGAGAAAGCCCTACAAGATTCC 1598594 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||||| ||||| ||||| | |||||||| || || |||||||| || ||||||||||| Sbjct 1598593 AAGATGGATAAGTCCAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATTCCC 1598534 Query 552153 AAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | || ||| | | || ||||| | | || | || | ||| | | Sbjct 1598533 AAAATCCAGAAGTTCTTGCAAGATTTC--TTRAATGGCAGAGAACTGAACAAGAGTATCA 1598476 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| || |||||||| ||| | || || ||||| || || | | Sbjct 1598475 ACCCAGATGAAGCTGTGGCTTATGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGTGACA 1598416 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 || || || | ||| || | | || | || || |||| || ||||| ||| | | Sbjct 1598415 CTTCGGAGAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGTATTG 1598356 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 | || | ||| || | ||||| ||| ||| | | || || ||||| || || Sbjct 1598355 AGACTGCTGGTGGAGTCATGACACCTCTGATCAAACGCAACACAACTATCCCCACCAAGC 1598296 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 || | | | || | || || |||||||| || ||| ||| |||||| | | || Sbjct 1598295 AAACCCAGATCTTCWCCACCTACTCAGATAACCAYCCTGGTGTGCTAATTCAGGTGTATG 1598236 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 | || || ||| | || || || || || | || || | ||| | | | || | Sbjct 1598235 AGGGCGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTCGCTGGCA 1598176 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||||||||| || || |||||||| | || || |||||||| || |||||||| | Sbjct 1598175 TCCCTCCTGCTCCCCGAGGCGTACCGCAGGTGGAGGTAACTTTCGACATTGATGCCAACG 1598116 Query 552571 GAATTTTGAATGTGACTGCT 552590 ||||| |||| ||| ||||| Sbjct 1598115 GAATTCTGAACGTGTCTGCT 1598096 Score = 179 bits (198), Expect = 3e-39 Identities = 393/586 (67%), Gaps = 14/586 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||||| |||||||| ||| ||||||||| |||| ||| |||| ||||| Sbjct 1599547 ATTGGCATTGATTTGGGAACCACCTATTCTTGTGTTGGGGTTTTCCAACATGGCAAAGTG 1599488 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| || || || ||||| || ||||| ||||| | || || || Sbjct 1599487 GAGATCATTGCCAACGACCAGGGCAACAGGACAACTCCCAGCTATGTGGCCTTTACRGAC 1599428 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||| ||||| || || | || | ||| || || || |||||| Sbjct 1599427 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCA-TG--AACCCCACCAAT 1599371 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || ||||| || || || |||| ||||||| |||||||| || | || ||| | Sbjct 1599370 ACAATATTTGARGCCAAGCGACTAATAGGAAGAAAGTTTAATGACTCCATCGTCCAGTCC 1599311 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | |||||||||| | | | | || | ||||| || | || | | Sbjct 1599310 GACATGAAACTTTGGCCTTTCAAGGTGATCAGTGATAACGGAAAGCCCAAAGTTCAGGTG 1599251 Query 550292 ACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 || |||| || ||| || | || ||| |||| || || ||||| | Sbjct 1599250 GAGTATAAAGGCGA----AACCAAGGCCTTCTACCCTGAAGAAATCTCGTCAATGGTCCT 1599195 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||||||| | | ||| || | | || ||| | ||| | ||||||| || Sbjct 1599194 GGTTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGACAAAAGGTTTCAAATGCAGTCAT 1599135 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || ||||| ||||| ||||| || || | ||||| ||||| ||||||||| || Sbjct 1599134 CACAGTGCCAGCTTATTTCAATGATTCTCAGAGGCAAGCCACTAAGGATGCTGGAGTGAT 1599075 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || ||| |||| | || ||||| ||||| || || || || |||| || || Sbjct 1599074 CTCTGGTCTGAATATTCTGAGGATCATCAACGAACCCACAGCAGCAGCGATTGCCTACGG 1599015 Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | |||||| ||| ||| | || || |||||||||||| Sbjct 1599014 CTTAGATAAAGGTAAAAGAGGAGAGCGCAARGTGCTCATCTTTGAT 1598969 >seq21 Length=10546925 Score = 127 bits (140), Expect = 2e-23 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| |||||||||| Sbjct 2489958 ATGCAGTCATCACGGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 2489899 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| || ||||| || || || |||||||| || |||||||| || Sbjct 2489898 CTGGAGTCATTGCTGGGCTCAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 2489839 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || |||||| Sbjct 2489838 TTGCTTATGGCCTGGATAAA 2489819 >seq11 Length=13916851 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| ||||| ||||||||||| ||||||||||| || || |||| Sbjct 13377018 ATGCTGTTATTACAGTACCTGCATACTTTAATGACTCGCAACGTCAAGCAACCAAGGATG 13377077 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||| |||| | ||||| | | || || ||||| |||||||| || || Sbjct 13377078 CTGGAACTATCTCTGGTTTAAATGTGTTAAGAATCATAAATGAGCCTACTGCAGCAGCCA 13377137 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 13377138 TCGCTTATGG 13377147 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | || || || || || || |||||||| || || || || || || |||| Sbjct 13366460 ATGCTGTAGTCACAGTGCCCGCCTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGATG 13366401 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || |||||| | ||||| ||||||||||| ||||||||||| Sbjct 13366400 CAGGCACTATCTCTGGCCTCAATGTTTTGCGTATCATCAATGAACCAACTGCTGCTGCCA 13366341 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 13366340 TCGCCTATGG 13366331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028792275042250