Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq13 158 1e-33 seq22 109 4e-19 >seq13 Length=13670824 Score = 158 bits (174), Expect = 1e-33 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| |||||| |||||||| ||||| || | |||||||||||| || || || Sbjct 11903247 AGTCCCGTGATGTGAGCGATCATGTAGGTGAGAAGTGCGTAGCTGGCGATATTGAAAGGG 11903188 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || ||||| | |||||| ||||||||||| ||||| || ||| || Sbjct 11903187 ACGCCCAGACCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGATC 11903128 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045 ||||| ||||| || | || |||||| || || |||||||||||| || |||| || Sbjct 11903127 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCTGTG 11903071 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 30157 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30216 ||||| ||||| || || |||||||||||||| |||||||| ||||||||||| |||||| Sbjct 11902520 GTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCCTCT 11902461 Query 30217 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || || | | ||| || || |||| || | || || |||||||| ||||||||| Sbjct 11902460 TCTCTTTCCGTGAACCCGAGATTATCCAGGAACTGTCGAGACCCGTTGGCTTCCCAGATC 11902401 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 || ||||| ||||| |||||||| |||| ||| || ||||| Sbjct 11902400 TTCACCCCTTTCTCTGAGAGCTCCTTGGCGTTGGTTGACCC 11902360 >seq22 Length=10337708 Score = 109 bits (120), Expect = 4e-19 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 || |||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 10258028 CTGCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGA 10258087 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| || ||||| |||||||| ||||| || ||| Sbjct 10258088 GAACCACGTCTTCCTGCCCATGATCACCACATTCTGTTTACCT 10258130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408570165242825