Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq14 275 1e-68 seq6597 123 5e-23 seq45 111 3e-19 seq11 91.5 3e-13 >seq14 Length=13523219 Score = 275 bits (304), Expect = 1e-68 Identities = 852/1299 (66%), Gaps = 36/1299 (3%) Strand=Plus/Minus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 || |||| || ||||| | ||||||||| || || | ||| | |||| | | Sbjct 9106931 ACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGCC 9106872 Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||||| |||| ||||||||||||||||||| |||| || || ||||| || Sbjct 9106871 TCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGG 9106812 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 ||||| ||||| || ||| ||||||||| ||||| || ||||| || Sbjct 9106811 CTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCA 9106752 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || |||||||| | | ||||||| | || || ||||| || || |||| | || Sbjct 9106751 ATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGTAGTAGTTAATCTCT 9106692 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAG-CTTCTGGTGATT 221655 || | ||||| |||||| ||| ||||| ||| || || | | | || Sbjct 9106691 ATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCAC-------AGACTCCAGTTTTTT 9106639 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 ||| | || |||| ||| ||||| | | | | || || || | | ||| Sbjct 9106638 GAAGTCAAAAGT-CCGC--TCG----GGGGTGACGTACATG--TTGAGAGCGATGGAGGC 9106588 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 ||| ||||| ||||| ||||| || | |||| || | | ||| || || |||||||| Sbjct 9106587 CAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTT 9106528 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 |||||| |||||||| || || | | || || ||| | ||| ||||| ||||| Sbjct 9106527 GCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 9106468 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 ||||| | || || |||||| ||| | | | | | || ||| || | || Sbjct 9106467 CAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAGCTG-CT 9106409 Query 221896 G-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954 | || |||| | |||||| ||||| ||| |||||| ||| |||||| | | Sbjct 9106408 GAGCCTTCACAACACGCTTGACCCGCCCCTC---CTTCTCATACTGGGTGTAGAGCTTCT 9106352 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 |||||| || || | ||||||||| || || ||| | ||||||||||||| || Sbjct 9106351 CAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGAGACC 9106292 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 ||| || |||| | ||| |||| |||||| | ||| |||||||||| | | || | Sbjct 9106291 AGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACAAGCCGTAGAAAA 9106232 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 ||||||||| | ||||||||| || |||| ||| |||| |||| || ||||| | Sbjct 9106231 GATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACA 9106172 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 |||| |||||| |||||||| || | ||| | || ||||||| ||||||||| |||| Sbjct 9106171 CGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCT 9106112 Query 222195 GATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 | || || | | || |||| ||| | || | || ||||| ||||| || Sbjct 9106111 GGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCCGTTTGAGT 9106052 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTGGCAGACATGCC 222312 ||||||||||| |||||| || || ||| | || | | ||| | | || ||| Sbjct 9106051 TGCCGTTGGTGCCAGCAATGTA-GCTCC-CCGTTGATCTGATGCAGCTGACCGCCACGCC 9105994 Query 222313 GATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTC 222372 ||| || || || || ||||| | ||| || ||| || ||||| ||||| || Sbjct 9105993 GATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCCGTC 9105934 Query 222373 CATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACA 222432 || ||| ||||| | | | ||||| || || |||| ||||| || ||| | Sbjct 9105933 GATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCC 9105874 Query 222433 GGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGT 222492 ||||| || ||||| ||| ||||| || || | | || | ||| | ||| || Sbjct 9105873 TGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGT 9105814 Query 222493 CTCTACGACTCTGGCGAT-GTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGT 222551 ||| | | | | |||| | ||| ||| || | || ||||||| ||||| Sbjct 9105813 CTCGATGGCGGCGTCGATAGCTGT-TTTGTGGATACCAACAGCCACTCTCATGAGCATGT 9105755 Query 222552 ACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAG 222608 ||| |||| || |||| || || || || |||| ||| || ||||||| Sbjct 9105754 GCTGCGGCCGCTCGGCCACTTTGCCGTT-GATCT--TCAGCAAGTAGGAACGCTCCAGAG 9105698 Query 222609 TCTTGAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646 ||||||| |||||| ||||| ||| ||| |||||| || Sbjct 9105697 TCTTGAAGCCAAAGAAGTTGTAGGAGAAA-TCTCTGTCG 9105660 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| | |||| || || ||| || | Sbjct 9107214 CATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 9107155 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| || || ||||| | ||| | ||| ||| | | |||||| Sbjct 9107154 CTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 9107095 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 9107094 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 9107035 Query 221245 GTT 221247 ||| Sbjct 9107034 GTT 9107032 >seq6597 Length=1954 Score = 123 bits (136), Expect = 5e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| |||| ||||| || || |||||||| ||||| ||| |||||||| || Sbjct 360 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 301 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||| ||| ||| || ||||||||| ||| ||| |||||||||||| Sbjct 300 TCCATCTTCTGGCTGAAGAAGAGAGGTCTCATGCCCGGCCTGACCTTCTCCAACGAGCTC 241 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| || |||| Sbjct 240 ATCAGCAGAGATGAGG 225 >seq45 Length=2253462 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || ||||||||||||||||| ||||| ||| |||||| || || Sbjct 2024712 GGTGAGCGAATTGTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCCGGTTCATTCGCT 2024653 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||| ||||| ||| ||| || ||||| ||||| ||| ||||| ||||| Sbjct 2024652 GCCATCTTTTGGCTGAAGAAGAGAGGATTAATGCCTGGGCTTACCTTCTCCAATGAGCTG 2024593 Query 25993 ATCAGCAGGGACGAGG 26008 ||||||||||| |||| Sbjct 2024592 ATCAGCAGGGATGAGG 2024577 >seq11 Length=13916851 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||||||||| |||||||||| || || || ||||||| || ||||||||| Sbjct 4879108 CATGAAGAGGTCTGGGATCCACATGGCAAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 4879049 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||| ||| ||| || || |||||||| | ||| ||||| |||||||| || Sbjct 4879048 ACCTGTGTTCTTCTTCAACTCTAAGAACTCAAACACGTCGAAATGCCAGGGCTCCAGGTA 4878989 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 ||||| | || ||||||| || Sbjct 4878988 CACGGCGAAGGCCCCGGGTCTCT 4878966 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||||||||||| ||||||||||||||||||| |||||||| || |||||| || | Sbjct 4880489 CAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGAATGTTGAGTAGCTGGGCCTCTGG-GC 4880431 Query 221479 AGTGAAGGGCAT-ACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | || | || ||||| | ||| | || ||||| ||||| |||||||| || | Sbjct 4880430 TTTCAAACGGATAACGCATAAGGATGAAGGCATCAGCCAGACCCTGCACTCCGATTCCAA 4880371 Query 221538 TGGGCCTGTGTCTCCTGTTGGA 221559 | |||||||| | ||||||||| Sbjct 4880370 TTGGCCTGTGACGCCTGTTGGA 4880349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928734209416000