Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq15 196 3e-44 seq21 104 2e-16 seq11 104 2e-16 >seq15 Length=13389401 Score = 196 bits (216), Expect = 3e-44 Identities = 378/553 (68%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||||| ||||| || || |||||| | |||| ||| ||| Sbjct 1599555 GAATATCCATTGGCATTGATTTGGGAACCACCTATTCTTGTGTTGGGGTTTTCCAACATG 1599496 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || |||||||| ||||| || || || ||||| || ||||| | | Sbjct 1599495 GCAAAGTGGAGATCATTGCCAACGACCAGGGCAACAGGACAACTCCCAGCTATGTGGCCT 1599436 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || || || |||||||||||||| || | || | ||| || || Sbjct 1599435 TTACRGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAACCCCA 1599376 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 ||||| || ||||| || || || | || || | || ||| |||| ||| |||| Sbjct 1599375 CCAATACAATATTTGARGCCAAGCGACTAATAGGAAGAAAGTTTAATGACTCCATCGTCC 1599316 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | || || ||| | ||||||||| |||||||| | || | || || || | | Sbjct 1599315 AGTCCGACATGAAACTTTGGCCTTTCAAGGTGATCAGTGATAACGGAAAGCCCAAAGTTC 1599256 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | | || | ||| ||||| || || | || ||| |||| || |||||||| Sbjct 1599255 AGGTGGAGTATA--AAGGCGAAACCAAGGCCTTCTACCCTGAAGAAATCTCGTCAATGGT 1599198 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | |||||||| | | || ||| | || || |||||| | || | |||||| Sbjct 1599197 CCTGGTTAAAATGAAGGAGATAGCTGAG-GCCTACCTGGGACAAAAGGTTTCAAATGCAG 1599139 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| ||||| ||||||||||| | ||||| ||||| ||||| ||| Sbjct 1599138 TCATCACAGTGCCAGCTTATTTCAATGATTCTCAGAGGCAAGCCACTAAGGATGCTGGAG 1599079 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | ||||| ||| || | | || || || ||||| |||||||| || |||| | Sbjct 1599078 TGATCTCTGGTCTGAATATTCTGAGGATCATCAACGAACCCACAGCAGCAGCGATTGCCT 1599019 Query 474861 ATGGTCTTGATAA 474873 | || | ||||| Sbjct 1599018 ACGGCTTAGATAA 1599006 Score = 132 bits (146), Expect = 3e-25 Identities = 411/629 (65%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAAA 475606 ||||| | || ||||| ||||| || || || || || ||| || |||||||| Sbjct 1598721 TTGAAATRGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCC-ATCACAAGGGCACGC 1598663 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 ||||| || | || |||||||| || |||| | || || || || ||| || Sbjct 1598662 TTTGAGGAGCTCAACTCAGATCTCTTCAGGGGAACACTGGAGCCAGTGGAGAAAGCCCTA 1598603 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 |||||| || | || || || |||| |||||||||| || || || || || || || Sbjct 1598602 CAAGATTCCAAGATGGATAAGTC-CAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCAC 1598544 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATG 475784 ||||||||| ||||| |||| | ||| || || | || ||||| | | | | || Sbjct 1598543 AAGAATTCCCAAAAT-CCAGAAGTTCTTGCAAGATTTCTTRAATGGCAGAGAACTGAACA 1598485 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 | ||| | || || ||||||||||| || ||||| || || ||||| || ||||| | Sbjct 1598484 AGAGTATCAACCCAGATGAAGCTGTGGCTTATGGTGCAGCAGTCCAGGCTGCTATCCTCA 1598425 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 ||| | | ||||| | | || | | || | ||||| |||| || || Sbjct 1598424 TGGGTGACACTTCGGAGAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTC 1598365 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 | ||| |||| || | ||| || | ||||| ||| || | | || || |||||| Sbjct 1598364 TGGGTATTGAGACTGCTGGTGGAGTCATGACACCTCTGATCAAACGCAACACAACTATCC 1598305 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 | ||| || | | | || |||| || || ||||| || | ||| || | Sbjct 1598304 CCACCAAGCAAACCCAGATCTTCWCCACCTACTCAGATAACCAYCCTGGTGTGCTAATTC 1598245 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084 | | | ||| || || ||| | || || || || ||| || || | ||| | | Sbjct 1598244 AGGTGTATGAGGGCGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGC 1598185 Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | | || || |||||||||||| |||| || || || | || || ||||| || |||| Sbjct 1598184 TCGCTGGCATCCCTCCTGCTCCCCGAGGCGTACCGCAGGTGGAGGTAACTTTCGACATTG 1598125 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCT 476173 |||| || || ||||| || || ||||| Sbjct 1598124 ATGCCAACGGAATTCTGAACGTGTCTGCT 1598096 >seq21 Length=10546925 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || || ||||| || || || ||||| || || |||||||| |||||||||| Sbjct 2489958 ATGCAGTCATCACGGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 2489899 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || || ||||| | || || || ||||| || || || || || Sbjct 2489898 CTGGAGTCATTGCTGGGCTCAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 2489839 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || ||||| || Sbjct 2489838 TTGCTTATGGCCTGGATAAAAA 2489817 Score = 100 bits (110), Expect = 2e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||||||||||||| ||| | || || |||||||||| || || | ||| | || Sbjct 2488727 TCTTTGAAGGTGAGAGAGCCATGACCAAGGATAATAACATTCTGGGCAAGTTTGAGCTCA 2488668 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 |||||||| || |||||| |||| || ||||| || || || || ||||| ||||||| Sbjct 2488667 CTGGTATTCCACCAGCTCCCCGAGGGGTCCCTCAGATCGAGGTGACCTTTGACATTGATG 2488608 Query 476148 CAAATGGTATTCTTAATGTTACTGC 476172 | ||||| || || |||||| |||| Sbjct 2488607 CCAATGGAATCCTCAATGTTTCTGC 2488583 >seq11 Length=13916851 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || ||||| || || ||||| |||||||| || |||||||||||||| || |||| Sbjct 13377018 ATGCTGTTATTACAGTACCTGCATACTTTAATGACTCGCAACGTCAAGCAACCAAGGATG 13377077 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||| | ||||| ||| | || || ||||| || || ||||| || Sbjct 13377078 CTGGAACTATCTCTGGTTTAAATGTGTTAAGAATCATAAATGAGCCTACTGCAGCAGCCA 13377137 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | ||||||||| | || || || Sbjct 13377138 TCGCTTATGGTTTGGACAAAAA 13377159 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||||||| | || || || ||| ||||| | ||| | || |||| ||| Sbjct 13376410 GCAGTTGGTATTGATCTCGGGACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGAAAA 13376469 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||||||||| || || || || ||||| ||||| | || || Sbjct 13376470 GTTGAGATCATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACA 13376529 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || || || || ||||||||||| || ||| |||| | ||| Sbjct 13376530 GATACAGAGAGGCTGATTGGAGATGCAGCCAAAAATCAGGTTGC 13376573 Score = 86.0 bits (94), Expect = 4e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 290814 TTTTGCTTCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATA 290873 ||||| ||||| |||||| | | | ||||| || || |||||||| |||||||| | Sbjct 13377158 TTTTG--TCCAA-ACCATAAGCGATGGCTGCTGCAGTAGGCTCATTTATGATTCTTAACA 13377102 Query 290874 CATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAAT 290933 ||| | ||| | || || | | ||| ||||| || ||||||| |||||||| | Sbjct 13377101 CATTTAAACCAGAGATAGTTCCAGCATCCTTGGTTGCTTGACGTTGCGAGTCATTAAAGT 13377042 Query 290934 AAGCAGGGACTGTAATAACAGCTTTT 290959 | ||||| |||||||||||||| ||| Sbjct 13377041 ATGCAGGTACTGTAATAACAGCATTT 13377016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267770626534700