Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 >seq4 Length=20050102 Score = 150 bits (166), Expect = 2e-31 Identities = 595/916 (65%), Gaps = 40/916 (4%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121 |||| |||| || || | | ||||||| || | || || |||||||| | || || Sbjct 7216915 TCCAAACATCTGATCGCAATCTCGTCAACCTCAACATCAAACTTATTTGCAA---GAAGG 7216971 Query 160122 TGAGCGTTCTGT---AGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGT 160178 || || || || | ||| || | ||| || | || |||| || ||||| ||| Sbjct 7216972 TGT---TTTTGACTCAGCAGCCACTGGAGGTCACCAGCTCCYTACACACAAACGGAGCGT 7217028 Query 160179 ATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTAC 160238 ||| || || ||||| | || ||| ||||||| || || |||||| | | || Sbjct 7217029 CTGTAAACACCAGTGCAATGAGGATACGGAGCTCCATTTTTTACATCACCTGCCAAATAG 7217088 Query 160239 TGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACAT--CA 160296 ||||||||| | | || | ||||||||||| | || || |||| | || Sbjct 7217089 CCCCACTTCACCACACGAGCGAAGGCCTGCATGTCTGTTACATCATACTTGTTGTTGGCA 7217148 Query 160297 GGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGG 160356 || | | ||||| || |||||| | |||||| |||||||||| ||| ||||| | Sbjct 7217149 GGCGTT--GATCCGGGTACAGAGGGCATCCTCTGTAGAGTGGCCCACAAGTGCTCGTCAG 7217206 Query 160357 GGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT----GTCCCGCAGA 160412 ||||||| |||||||| ||| |||| || | || || |||| |||| ||| Sbjct 7217207 GGCTGTATGTGTCCTTCACCCACTCCAGGAGTT-TCTGA---ACCTCTGTGTCCTGCATC 7217262 Query 160413 ACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATG 160472 || || || || ||| ||| | || |||| || || | || | ||| ||||| || Sbjct 7217263 ACATGTGTCACAAAGGCTCTTGAGACCACAACATAGGCATTCCCTGTGAACATCGGGCTG 7217322 Query 160473 GGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTA----GACACCACTCCTTTCACCAG 160528 || || || | | |||| || | || ||| |||||| || | || || Sbjct 7217323 CTAATCGGTGGAG-GACTTT-TCATCACATCTGTCCTGATGACACCG-TC--TGCAACAT 7217377 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTG--CGGTGGCATGCGTTCCGTCTCTAGA 160586 | || | | || ||| | | | |||||| | |||| | || ||||| | | Sbjct 7217378 TG--TGATGATACTGCCAACGGCCTTTCTTGTAGTCATTGGCCGCC--TCAGTCTCCATA 7217433 Query 160587 CTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGA 160646 ||||| || | || || || || || |||||| || || || | ||| Sbjct 7217434 CTGTTTCTTCCATTTAGAATCTTGAGTACTTTAACCATCTCTCCATTGGTTTTTATCGGG 7217493 Query 160647 AAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAGGTC 160705 |||||||| || || ||| | || |||| |||| || || | | || ||| || Sbjct 7217494 AAGTCGGTCCCACATGTGTTGAGCAGGTACCTCCACTTTACGGGTGACTTCAA-CAGATC 7217552 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 ||||||| || | |||||||||||| ||| ||| || || || | || ||||| Sbjct 7217553 TGTCATGCAGTTCAGATCTGCCTGCACACGGGACCATGAGGCATAAATCACACTCTCTGA 7217612 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAA 160825 |||||| || | ||| || || |||||| | || || || ||| ||| ||| Sbjct 7217613 TTTACTAGCTATAAACACATTGGGGAAACAGGCAACAATAGCCTGCACGGCCTCCCGGAA 7217672 Query 160826 CATCTTATCCGC-CTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGG 160884 ||||| | |||| ||||||||||||| || || | ||||||||| || || | | Sbjct 7217673 -ATCTTTGGAGGACTTTTGGTCCACGTGCACACAGTAGATGTTCTGAGGTGCATAAAGTG 7217731 Query 160885 CCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCG 160944 | | || | | ||| ||||| || || || | ||||||||| || |||||||| || | Sbjct 7217732 CTCGAAGAAGTCGCTCAAACATTTCAATTTTCTCATGGATCACCATGGAGTAGGCAATGG 7217791 Query 160945 GAAACTCGGTCTCCTC 160960 |||| || ||||||| Sbjct 7217792 GAAAATCATTCTCCTC 7217807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577150474839000