Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14 172 7e-38 seq11 105 8e-18 seq45 82.4 9e-11 >seq14 Length=13523219 Score = 172 bits (190), Expect = 7e-38 Identities = 894/1401 (64%), Gaps = 48/1401 (3%) Strand=Plus/Plus Query 75304 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAG 75363 ||||| ||||| | || || |||||||| || || || || || ||| ||||||| Sbjct 9105840 GTTCACCCACGCGTCTCCTACGCTCTTCAACGCAGGAACCAACAGGCCTCAGCTGTCCAG 9105899 Query 75364 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 75423 |||||||| || ||| ||||| ||| ||| |||| || |||| || || | | | Sbjct 9105900 CTGCTTCCTGCTCACCATGAAGGATGACAGCATCGACGGCATTTATGACACGCTGAAGCA 9105959 Query 75424 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATG--TGAGA 75481 |||||| | ||||| |||| ||||| || || || || || | || | ||| Sbjct 9105960 GTGTGCCCTCATCTCCAAGTCAGCTGGAGGAATCGGCGTGGCGGTCA--GCTGCATCAGA 9106017 Query 75482 GCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 75540 | | | || ||| || || || || | ||| | || | | || ||||| Sbjct 9106018 TCAACGGGGAGCTAC-ATTGCTGGCACCAACGGCAACTCAAACGGGCTGGTCCCCATGCT 9106076 Query 75541 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCG-CAAG------G 75593 | || | ||| ||| ||||||||||| | || ||||| | |||| | Sbjct 9106077 GAGAGTCTACAACAACACGGCGCGCTATGTCGACCA----GGGCGGCAACAAGAGACCCG 9106132 Query 75594 GGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-A 75652 || || |||| | ||| |||| |||||||| || | | || ||||| ||| | | Sbjct 9106133 GGGCCTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTGGAGCTGA 9106192 Query 75653 CGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATT 75712 || ||| ||| | || ||| | |||||||| || | | ||||||| Sbjct 9106193 AGAAG-AACACAGGGAAGGAGGAGCAAAGAGCCAGAGATCTTTTCTACGGCTTGTGGATC 9106251 Query 75713 CCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTGGTCAATGGTCTCTTTTCTGTCCAG 75770 || ||| | ||||||||| | || ||| | || | |||||||| | ||||| Sbjct 9106252 CCCGACTTGTTCATGAAGAGAGTCGAGAGCAACCAGGAC--TGGTCTCTGATGTGTCCCA 9106309 Query 75771 ACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAG 75829 | || || || || ||| || | ||| ||||||||||| |||||||| || Sbjct 9106310 GCGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTACACCCAG 9106368 Query 75830 TATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTAT 75888 ||||| ||||||| | | ||| ||| | || | | | | | ||| | || | Sbjct 9106369 TATGAGAAGGAGGGGCGGGTCAA-GCGTGTTGTGAAGGCTCAGCAGCTGTGGCACGCCGT 9106427 Query 75889 TCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAA 75948 || | || ||||||||||| || ||||| || ||||| ||||| || || || |||| Sbjct 9106428 CATCGAGTCCCAGACGGAGACGGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAG 9106487 Query 75949 GAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTT 76008 |||||| |||||| ||||| | || || ||||| || || || ||||| ||||| | Sbjct 9106488 GAAGAGCAACCAACAGAATCTTGGCACCATCAAATGCAGCAACCTCTGCACCGAAATCGT 9106547 Query 76009 AGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAA 76068 || ||||| | | |||||| || || || ||| |||| || ||||| || | Sbjct 9106548 TGAATACACCAGTGACGATGAGGTCGCCGTCTGTAATCTGGCCTCCATCGCTCTCAACAT 9106607 Query 76069 GTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGAT 76128 ||| |||| ||| || |||||||| | ||||||| | | || || | Sbjct 9106608 GTACGTCACCCCCGAG---CGGACTTTTGACTTCAAAAAACTGGAGTCTGTGACCAAAGT 9106664 Query 76129 TGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGC 76185 | | ||| || || ||| |||| || | || | || || || ||| ||| Sbjct 9106665 TATCGTCAAGAACCTGAACAAGATCATAGAGATTAACTACTACCCAGTGCCCGAGGCTG- 9106723 Query 76186 GCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGT 76245 ||||| || | ||| ||||| || ||||| | || || || ||| | || || | Sbjct 9106724 --ATAAGTCCAACAAGCGCCACAGGCCAATTGGAATCGGCGTCCAGGGTTTGGCCGACGC 9106781 Query 76246 ATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTAT 76305 || || || || ||| | ||||| || || || | |||| | || Sbjct 9106782 CTTCATCCTGATGCGTTACCCCTTTGAAAGCCCAGAGGCTCAGCTGCTGAACATCCAGAT 9106841 Query 76306 CTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCA--- 76362 |||||| ||||| || |||| ||||||||||||| || || |||| |||| | Sbjct 9106842 CTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGC---AGCCGAGTT 9106898 Query 76363 AGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGAT 76420 || |||| ||||||| || || | ||| ||| |||||| | || |||| || Sbjct 9106899 GGGCCCCTACGAGACATACGAAGGCTGTCC--TGTCAGCAAGGGCATCCTCCAGTACGAC 9106956 Query 76421 ATGTGGGAAGGTGAAACCAAGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAA 76479 ||||||| || || || | | | | |||||| | | || |||||| ||| Sbjct 9106957 ATGTGGG-AGAAGACGCCCACCGACCTGTGGGACTGGAAGCTGCTGAAGGAAAAGATCGC 9107015 Query 76480 GGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 76539 || | || | | ||||| || || |||| || ||||| || ||||||||||| || Sbjct 9107016 CAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCA 9107075 Query 76540 AATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAAC 76599 ||| |||| || || || | | | || | ||||| | ||||||||| | || Sbjct 9107076 GATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGT 9107135 Query 76600 CCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGG 76659 ||| | || |||||| || |||||| || || |||| ||||| | | ||| || Sbjct 9107136 CCTGTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGG 9107195 Query 76660 TCTCTGGTCCAAGGATATGAA 76680 || ||| | |||| ||||| Sbjct 9107196 ACTGTGGAGCGAGGAGATGAA 9107216 >seq11 Length=13916851 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 4879453 TGGCATGCCATCATCGAGTCACAGACAGAAACGGGAACACCATACATGCTCTACAAGGAC 4879512 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| ||| Sbjct 4879513 GCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGC 4879572 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || | ||||||||| || |||||| Sbjct 4879573 ACAGAGATAGTGGAGTACACAAGCAAAGATGAG 4879605 >seq45 Length=2253462 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || ||||| ||||||||| |||||||||||||| |||||| || Sbjct 2024709 GAGCGAATTGTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCCGGTTCATTCGCTGCC 2024650 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | |||| |||||||| | || | ||||| || || |||||| ||||| || || Sbjct 2024649 ATCTTTTGGCTGAAGAAGAGAGGATTAATGCCTGGGCTTACCTTCTCCAATGAGCTGATC 2024590 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 2024589 AGCAGGGATGAGG 2024577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596498570932000