Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1660 154 2e-31 seq11 143 3e-28 seq3 111 2e-18 seq14 105 8e-17 seq25 96.9 4e-14 seq6597 87.8 2e-11 seq28 86.0 8e-11 >seq1660 Length=16444 Score = 154 bits (170), Expect = 2e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 5523 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 5464 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 5463 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCACCGGCGATGCGCTCGAAGA 5404 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 5403 TGTCGCTSACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 5344 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 5343 GCACCTGCTTCAGCACCTTGTA 5322 >seq11 Length=13916851 Score = 143 bits (158), Expect = 3e-28 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| | |||||| || |||||||||||||| | | | ||| ||| Sbjct 13382407 GCCAGCTCGCCGGGCAGCAGCAGGCGGACAGCGGTCTGGATCTCCCTGGAGGTGATGGTG 13382348 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||||||||| || || || || | ||||| |||| |||||| Sbjct 13382347 GAGCGCTTGTTGTAGTGCGCCAGCCGCGACGCTTCACTGGCTATGCGCTCGAAGATGTCG 13382288 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | |||| |||||| ||| ||| ||||||||| Sbjct 13382287 TTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCCGTGTCTGGGTGCACC 13382228 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||||||||| Sbjct 13382227 TGCTTCAACACCTTGTA 13382211 >seq3 Length=22537114 Score = 111 bits (122), Expect = 2e-18 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| || ||||||||||| | ||| | || || Sbjct 16442850 GCTTGGCCAGCTCCCCCGGCAGCAGCAGCCGGACGGCGGTCTGCACCTCCCTGCTGGTGA 16442909 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||||||||| |||| || |||| || Sbjct 16442910 TGGTGGAGCGCTTGTTGTACTGGGCCAGCCGGGACGCCTCGGTGGCGATCCGCTCGAACA 16442969 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | | | ||||||| ||| ||| |||| Sbjct 16442970 GGTCGTTGACGAAAGAGTTCATGATGCTCATGGCCCGGCTGGAGATCCCCGTGTCCGGGT 16443029 Query 1254523 GCACCT 1254528 | |||| Sbjct 16443030 GAACCT 16443035 >seq14 Length=13523219 Score = 105 bits (116), Expect = 8e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| ||| || ||||||| | ||| || | Sbjct 9107203 TCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 9107144 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | || || || | ||| |||||||||||| ||||| | ||||| | |||| |||||| Sbjct 9107143 CGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGC 9107084 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| | |||| || || ||| | || || Sbjct 9107083 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 9107024 Query 1627475 CGTGCT 1627480 |||||| Sbjct 9107023 CGTGCT 9107018 >seq25 Length=8751422 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| | ||||| Sbjct 4849146 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 4849087 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| |||| || |||||| ||||||| Sbjct 4849086 CATGACCTGCCGCGGTCACCTGATGGCCATCACACGTCACGGCATCAACCG 4849036 >seq6597 Length=1954 Score = 87.8 bits (96), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 |||||||| |||||||||| || ||||||||||| |||||||||| ||| | | ||| Sbjct 1060 ACCTCCTCTGCGGTCCAGAAAGATGCCTCGGCCTTCTTGTACATCTGCCAGATGTCATGG 1119 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || |||| ||||||| ||| ||||| | ||||| || Sbjct 1120 TACTGGATGGGGAAGATGACGAAGCGCTGCGGGTTTTC 1157 >seq28 Length=7555886 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| |||| | ||| | |||||| | ||||||||| Sbjct 7328991 GCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACAGTGGCCAAC 7329050 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||| | ||||| || |||||||| Sbjct 7329051 ATGATTAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTCAACATCAA 7329100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106357533894425