Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq14 194 2e-44 seq7 104 2e-17 >seq14 Length=13523219 Score = 194 bits (214), Expect = 2e-44 Identities = 984/1549 (64%), Gaps = 51/1549 (3%) Strand=Plus/Minus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| ||| | || |||||| || |||| || || | || Sbjct 9107185 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCTGCGGG 9107126 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 9107125 TGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 9107066 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTG---ATTC 138655 || || ||||| |||| || || |||| | ||||| |||| || Sbjct 9107065 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG---CTTGGCGATCT 9107009 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 |||||| ||| | ||||||||||| ||| | || | || | |||||| ||||||| Sbjct 9107008 TTTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACT 9106949 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | || ||| || | |||| ||||||||| | ||||| || ||||| | Sbjct 9106948 GGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTG 9106889 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 ||| |||| ||||||||| || || | ||||| || || || ||||| || | Sbjct 9106888 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCA 9106829 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 ||| | ||||| | ||| || | || || | || |||| |||||||||| | Sbjct 9106828 GCAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAAC 9106769 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---A 138952 | || ||||| | ||| | || | |||||| || ||| || | || ||| | Sbjct 9106768 CCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGAC---TTATCAGCCTCGGGCA 9106712 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT 139012 || || ||||| | || ||||| ||||| | || |||| || || ||| | Sbjct 9106711 CTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCACAG 9106652 Query 139013 GCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 || | | || || || | || ||| ||| | ||||| ||| ||| Sbjct 9106651 ACTCCAGTTTTTTGAAGTCAAAAGT----CCG--CTCGGGGGTGACGT--ACA----TGT 9106604 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 ||| | || ||||| | || || || || || || ||| | ||||||| || | Sbjct 9106603 TGAGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGA 9106544 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 |||||| || | || || || ||||| || || | ||| ||||| ||||| || | || Sbjct 9106543 TTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGT 9106484 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 | || || |||||||| ||||| |||||||| || || ||| || | ||| || | | Sbjct 9106483 TGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGG 9106424 Query 139253 ATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTT 139312 | ||| | | ||| | | |||| | | | || ||| |||| Sbjct 9106423 CGTGCCACAGCTGCTGAGCCTTCACAACACGCTTGACCCGCCCCTCCTTCTCATACTGGG 9106364 Query 139313 CGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 |||||| | || || || | | || | | |||| || || | |||| | | Sbjct 9106363 TGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGGCACTCGCTGG 9106307 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 ||||||| || ||||| | ||| || ||| | | ||||||||| || || |||| Sbjct 9106306 GACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCC 9106247 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGT 139489 |||| || | | | ||| | || | | || ||| || |||| |||| | Sbjct 9106246 ACAAGCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCT 9106187 Query 139490 TAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TT 139546 ||||| ||||| |||||| ||||||||| ||||| || ||||| | || || | Sbjct 9106186 CCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTC 9106127 Query 139547 TCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCT 139606 || ||||| || || ||||| | || | | || ||| | || | || ||| || Sbjct 9106126 TCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGA 9106067 Query 139607 CCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGAGCTCGGACG 139662 |||| ||| | | | |||||||||| | ||| || ||| | || || | Sbjct 9106066 CCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTT----GATCTGATG 9106011 Query 139663 TCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-A 139720 || | || | ||||||||| || | | ||||| || | | || | || | | Sbjct 9106010 -CAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACT-GCTTCA 9105953 Query 139721 ATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAA 139780 || || || || || |||||||| |||| ||| |||| ||| ||||| || | Sbjct 9105952 GCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACA 9105893 Query 139781 GTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGT 139839 | || || || || || || || || |||||| |||||| ||||| || || | Sbjct 9105892 GCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCT 9105833 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 | || | || | ||| || ||||||||| | ||| | || ||||||||| ||| Sbjct 9105832 CT-GAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACA 9105774 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGA 139959 | |||| ||| ||||| || || ||| |||||||| ||| | ||| || || Sbjct 9105773 GCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAAG 9105714 Query 139960 TA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || | || ||| || |||||| |||||||| | | ||| |||||| Sbjct 9105713 TAGGAACG--CTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 9105667 >seq7 Length=16146599 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || ||||| || || || || || || || || ||| Sbjct 1869543 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 1869602 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||| |||||||| || || ||||| || || Sbjct 1869603 GACACCATTGAAAATGTTAAGGCCAAAATCCAGGACAAAGAGGGCATCCCTCCAGACCAG 1869662 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||| || | | | || || || ||| Sbjct 1869663 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 1869722 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || |||| ||||| || | ||||| Sbjct 1869723 ATCCAGAAAGAGTCCACCCTCCATCTGGTCTTGCGTCTGAGAGGAGG 1869769 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || | || || || ||| Sbjct 1869314 GATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCCAG 1869373 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| |||||||| || || ||||| || ||||| || || Sbjct 1869374 TGACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1869433 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| ||||| || || |||||||| || | | | |||||||||| || Sbjct 1869434 GCAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCAGATTACAA 1869493 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || || | ||| | || || | ||||| Sbjct 1869494 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGG 1869541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 1869771 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACTCTGGAGGTCGAGCCCAGC 1869830 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || ||||| || ||||| || || Sbjct 1869831 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1869890 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | |||| || || || Sbjct 1869891 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAT 1869950 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||| || || || || || |||| Sbjct 1869951 ATCCAAAAAGAGTCCACCCTCCATCTTG 1869978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449844034067000