Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7 143 2e-29 seq11 82.4 5e-11 >seq7 Length=16146599 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| | || |||||| || | |||| ||| ||||| ||||| ||||| || Sbjct 1869769 CCTCCTCTCAGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1869710 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||| ||||| ||||||||||| || || ||||||||| | || Sbjct 1869709 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 1869650 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | ||||| || || | | || | ||| ||| |||||| Sbjct 1869649 ATGCCCTCTTTGTCCTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACC 1869590 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || ||||| || |||||||||||||| Sbjct 1869589 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 134 bits (148), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||| |||| | ||||| || || | |||| ||| || || || || ||||| Sbjct 1870000 TTTCCTCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCG 1869941 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| |||| ||||| ||||| || ||||||||||| | |||||||| | Sbjct 1869940 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGA 1869881 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | || ||||| || | || || |||||| || || || | || ||| || Sbjct 1869880 GGGATGCCTTCCTTATCCTGGATCTTAGCTTTGAC--ATTCTCAATGGTGTCGCTGGGCT 1869823 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || | || |||||||| || ||||||||||| |||||||||||||| Sbjct 1869822 CGACCTCCAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| | || || || || | |||| ||||||||| ||||| || || || Sbjct 1869541 CCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGAC 1869482 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| ||||| || || || ||||| | |||||||| | || Sbjct 1869481 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1869422 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || |||||| || || || | ||| ||| ||||| Sbjct 1869421 ATGCCTTCCTTATCCTGGATCTTAGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 1869364 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || || |||||||| |||||||||||||| Sbjct 1869363 CCTCCAAAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 1869315 >seq11 Length=13916851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || |||||||| | ||||| ||| | || | || |||||||| | || || Sbjct 8385147 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8385088 Query 34898 TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 ||||| || || || | ||| ||| |||||| |||| ||| |||||||| || || | Sbjct 8385087 TTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 8385030 Query 34956 GGGTCTTTACAAAGATCTGCATG 34978 ||||||| || |||||||||||| Sbjct 8385029 GGGTCTTCACGAAGATCTGCATG 8385007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325654991645975