Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq15 277 1e-68 seq21 107 1e-17 seq11 96.9 3e-14 >seq15 Length=13389401 Score = 277 bits (306), Expect = 1e-68 Identities = 945/1460 (65%), Gaps = 18/1460 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||| || ||||| || |||||||| | || || || || || | || || || Sbjct 1598097 GCAGACACGTTCAGAATTCCGTTGGCATCAATGTCGAAAGTTACCTCCACCTGCGGTACG 1598156 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 |||| ||||||| ||||| || | | | ||| | ||||| || || || || Sbjct 1598157 CCTCGGGGAGCAGGAGGGATGCCAGCGAGCTCAAACTTGCCCAGGAGGTTGTTGTCCTTG 1598216 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || || ||||| | | || || || ||| || |||||||| || Sbjct 1598217 GTCATGGCTCTCTCGCCCTCATACACCTGAATTAGCACACCAGGRTGGTTATCTGAGTAG 1598276 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || | ||||| ||| || || || |||||||| | | || | | || Sbjct 1598277 GTGGWGAAGA-TCTGGGTTTGCTTGGTGGGGATAGTTGTGTTGCGTTTGATCAGAGGTGT 1598335 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||||| || || | ||| ||||| || |||| || || | || | | Sbjct 1598336 CATGACTCCACCAGCAGTCTCAATACCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAG 1598395 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 || ||| | || || ||| | ||| | || ||||| || || | || |||||||| Sbjct 1598396 ATCTTGGACGTTCTCCGAAGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCACCATA 1598455 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 281843 || ||||||||||| || || | | | | || |||| | | ||||| || |||| ||| Sbjct 1598456 AGCCACAGCTTCATCTGGGTTGATACTCTTGTTCAGTTCTCTGCCATTYAAGAAATCTTG 1598515 Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 ||||| || | | || ||||| | | || || ||||| | || |||||||| | Sbjct 1598516 CAAGAACTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCATGGA 1598574 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 || || ||||||| || ||||| || |||| || || || || || | | Sbjct 1598575 TCTTGGACTTATCCATCTTGGAATCTTGTAGGGCTTTCTCCACTGGCTCCAGTGTTCCCC 1598634 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 | || | ||||| || || || || || || || || || | || || || Sbjct 1598635 TGAAGAGATCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGGTGTAGAAGTC 1598692 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 || || || |||| ||| || | |||||| | | || || || || || | | Sbjct 1598693 GATGCCCTCAAACAGAGAGTCYATTTCAATGCTGGCCTGGGTGCTTGAGGACAGGGTCCT 1598752 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAA 282139 || || | ||||| ||||| | ||||| | | ||| | || ||| | | | Sbjct 1598753 CTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCTAACTGCTCT--CTTATTTTGGCTGATG 1598810 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 ||| | || || ||||| || || || || | | | || | ||||| ||||| Sbjct 1598811 TCTTTCTTGTACTTTCTTTTAAATTCCTCGAGGAAGTGACTGACCATCCGATTGTCAAAG 1598870 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || || || || | | || | ||||| || ||| |||| | || | || || ||| Sbjct 1598871 TCCTCCCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCAAAGATGCCGTCCTCA 1598930 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | || | | || ||| ||| || ||||| | |||||| || || || || Sbjct 1598931 ATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACYTTGCGC 1598990 Query 282320 TCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 ||| |||| || |||||| | || || |||| || || || || ||||| || Sbjct 1598991 TCTCC-TCTT--TTACCTTTATCTAAGCCGTAGGCAATCGCTGCTGCTGTGGGTTCGTTG 1599047 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || || |||| || ||| ||||||| || ||| ||||| ||||||||||| || || Sbjct 1599048 ATGATCCTCAGAATATTCAGACCAGAGATCACTCCAGCATCCTTAGTGGCTTGCCTCTGA 1599107 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 ||||| || ||||| || || || || || || |||| || || | || ||| | || Sbjct 1599108 GAATCATTGAAATAAGCTGGCACTGTGATGACTGCATTTGAAACCTTTTGTCCCAGGTAG 1599167 Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556 || ||| | | ||||||||| | | |||||| || |||| ||| || | | Sbjct 1599168 GCCTCAGCTATCTCCTTCATTTTAACCAGGACCATTGACGAGATTTCTTCAGGGTAGAAG 1599227 Query 282557 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 282616 ||||| ||| || ||| || | || | || || | || | || || Sbjct 1599228 GCCTTGGTTTCGCCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCACTGATCACC 1599287 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 || || |||||| |||||| || || || || | ||||||||| | ||| || ||| Sbjct 1599288 TTGAAAGGCCAAAGTTTCATGTCGGACTGGACGATGGAGTCATTAAACTTTCTTCCTATT 1599347 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 | ||| || || ||||| || |||||||| || || | ||| | || | ||||| ||| Sbjct 1599348 AGTCGCTTGGCYTCAAATATTGTATTGGTGGGGTTCATGGCAACCTGGTTCTTGGCAGCA 1599407 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||||||| || ||||| || ||||| | ||||| |||||||| | || || Sbjct 1599408 TCTCCAATGAGCCTCTCTGTGTCYGTAAAGGCCACATAGCTGGGAGTTGTCCTGTTGCCC 1599467 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || || || ||||| || || ||||| |||| ||| | || || |||||| | | || Sbjct 1599468 TGGTCGTTGGCAATGATCTCCACTTTGCCATGTTGGAAAACCCCAACACAAGAATAGGTG 1599527 Query 282857 GTTCCTAAATCAATACCAAT 282876 ||||| |||||||| ||||| Sbjct 1599528 GTTCCCAAATCAATGCCAAT 1599547 >seq21 Length=10546925 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| || ||||| |||| || |||||||| || ||||| || || | || ||| Sbjct 2489817 TTTTTATCCAGGCCATAAGCAATGGCTGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 2489876 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||| ||||||||||||||||| | || || || || || || Sbjct 2489877 TTGAGCCCAGCAATGACTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAGTAA 2489936 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || || || |||| Sbjct 2489937 GCAGGAACCGTGATGACTGCAT 2489958 >seq11 Length=13916851 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | ||| | |||| ||||||||||||||||||||| Sbjct 13376599 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTTTTGGCTGCATCTCCAATCAGCC 13376540 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 13376539 TCTCTGTATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 13376480 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || |||||||| |||| || | ||||| ||||| | || || || | ||||| Sbjct 13376479 TGATCTCAACTTTTCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCGAGATCAA 13376420 Query 282870 TACCAA 282875 |||||| Sbjct 13376419 TACCAA 13376414 Score = 86.0 bits (94), Expect = 5e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| || | |||||||||||||||||||| || || | ||||||| Sbjct 13366319 TTCTTGTCCAAACCATAGGCGATGGCAGCAGCAGTTGGTTCATTGATGATACGCAAAACA 13366378 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || | |||||||| || ||||| || | || || || || || || Sbjct 13366379 TTGAGGCCAGAGATAGTGCCTGCATCCTTGGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 13366438 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || |||| |||| Sbjct 13366439 GCGGGCACTGTGACTACAGCAT-TGTT 13366464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740162762752650