Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq14 237 2e-57 seq7 143 3e-29 seq11 107 2e-18 >seq14 Length=13523219 Score = 237 bits (262), Expect = 2e-57 Identities = 974/1527 (64%), Gaps = 38/1527 (2%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| | || || | ||||||||| |||| || || | || Sbjct 9107185 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGACAGGACCCTGCGGG 9107126 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | || | |||||||||||||||| ||||| ||||| | Sbjct 9107125 TGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 9107066 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | |||||| ||| | || ||| | || || || Sbjct 9107065 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTT 9107006 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||||| || ||| | || ||| | ||||||||||||||| Sbjct 9107005 CCTTCAGCAGCTTCCAGTCCCACAGGTCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 9106948 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || ||||| ||| | || | ||| ||||| | ||| || || | | || || Sbjct 9106947 GAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCTGC 9106888 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||||| || ||| ||||||| || ||||| || || |||| || Sbjct 9106887 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAG 9106828 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| |||||| | || ||||| | | | || |||||||| | || Sbjct 9106827 CAGCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAACC 9106768 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGA-----GAGGCGCGCGCTCTCG 148709 ||| ||||| | ||||| |||| ||| ||||||| || | || || || Sbjct 9106767 CTGGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGGCACT-- 9106710 Query 148710 AGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATT 148769 || |||| ||| || |||||||||| || || || | || || || | Sbjct 9106709 ---GGGTAGTAGTTAATCTCTATGATCTTGTTCAGGTTCTTGACGATAACTTTGGTCACA 9106653 Query 148770 CTGCGCAG------CAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCG 148823 ||| || |||||| || | ||| | ||| ||| | ||| Sbjct 9106652 GACTCCAGTTTTTTGAAGTCAAAAGTCCGCTCGGGGGTGACG-TACAT--GTTGAGAGCG 9106596 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || ||||| ||||| || ||||| |||||| | |||| || ||||| |||| | Sbjct 9106595 ATGGAGGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTG 9106536 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 || || |||||||||||||| ||| | |||| ||| |||||||| |||||||| ||| Sbjct 9106535 CAGAGGTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCG 9106476 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGC 149003 || |||||||||||||||||| || || ||| ||| | || | | | | | Sbjct 9106475 TCTTTGTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCAC 9106416 Query 149004 AGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGC 149063 || | ||| || ||| ||| | || ||||||| ||| || || || ||| Sbjct 9106415 AGCTGCTGAGCCTTCACAACACGCTTGACCCGCCCCTCCTTCTCATACTGGGTGTAGAGC 9106356 Query 149064 CGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGC 149123 ||| ||| |||| || |||| ||||| || |||||||||| | || ||||| || Sbjct 9106355 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGA 9106296 Query 149124 GACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTAC 149183 ||||| | || | || | |||||| |||| ||||| | ||| | |||| Sbjct 9106295 GACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACAAGCCGTAG 9106236 Query 149184 ATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGC 149241 | || || | || | |||| || || || |||| ||| | || | | Sbjct 9106235 AAAAGATCTCTGGCTCTTTGC--TCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGT 9106178 Query 149242 TGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCT 149295 || | ||| |||||| ||||| | ||||| |||| || || |||| | Sbjct 9106177 CAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTG---T 9106121 Query 149296 TGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGC 149355 |||||||||||||||| | |||| || ||||||| | |||| | ||| || | | | Sbjct 9106120 TGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCC 9106061 Query 149356 CACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACG 149414 | | | ||||||| || ||| |||| || || | || | | || Sbjct 9106060 CGTTTGAGTTGCCGTTGGTGCCAGC-AATGTAGCTCCCCGTTGATCTGATGCAGCTGACC 9106002 Query 149415 TTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAG 149474 |||||||| || || | |||| |||||| || || | ||||| || Sbjct 9106001 GCCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAA 9105942 Query 149475 ATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAA 149534 ||||| ||||||||||| ||||||||| ||||| ||||| | ||| || || Sbjct 9105941 ATGCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTG 9105882 Query 149535 CGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATC 149594 || || || ||| | || || ||||| || || | |||| | || Sbjct 9105881 TTGGTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGG 9105822 Query 149595 TCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATC 149654 | ||| | ||||| || ||| || | ||||| || | || || | ||| Sbjct 9105821 TTGTAGGTCTCGATGGCGGCGTCGATAGCTGTTTTGTGGATACCAACAGCCACTCTCATG 9105762 Query 149655 AGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT 149714 ||||| |||||||| ||||| ||||||||| || || ||||||||| || Sbjct 9105761 AGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAAGTAGGAACGCTCC 9105702 Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAG 149741 || |||||| |||||||| | |||||| Sbjct 9105701 AGAGTCTTGAAGCCAAAGAAGTTGTAG 9105675 >seq7 Length=16146599 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||||||||| || ||||| ||| | ||| ||| || ||||| Sbjct 1869746 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTG 1869687 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | ||||| ||||||||||| ||||||||||| || ||||| ||| || Sbjct 1869686 CTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATTTT 1869627 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | |||| ||||| ||||||| || || | ||||| ||| |||||||| Sbjct 1869626 GGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCGGT 1869567 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || || |||||||| Sbjct 1869566 CAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||||||||| || |||||||| ||| || ||| | | | || || |||| Sbjct 1869974 ATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCT 1869916 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || |||| ||||||||| ||||||||||||||||| || ||||| Sbjct 1869915 GCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCT 1869856 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | ||||| |||||| ||||||| || || | |||| ||| ||||| | Sbjct 1869855 TAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTCTTGCCTG 1869796 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || |||||||| Sbjct 1869795 TGAGGGTCTTCACAAAGATCTGCAT 1869771 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || |||||||| || ||| ||| || ||||| Sbjct 1869518 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCGTCTTCCAGCTG 1869459 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || |||| |||| ||||||||| ||||||||||||||||| || |||||| Sbjct 1869458 CTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTT 1869399 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||||| ||||| ||||||| || || | |||| ||| || || || Sbjct 1869398 AGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAAGTGATGGTCTTACCAGT 1869339 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 1869338 CAGGGTCTTCACAAAGATCTGCAT 1869315 >seq11 Length=13916851 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 4879591 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 4879532 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||| |||||||| ||||||||||| |||||||| ||| || ||||| Sbjct 4879531 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTTCCCGTTTC 4879480 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| |||||| || || || |||||||||||||| |||||| ||||| | | Sbjct 8385138 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTC 8385079 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || || ||| Sbjct 8385078 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 8385019 Query 133650 AAAATCTGCATGGCTTA 133666 || |||||||||| ||| Sbjct 8385018 AAGATCTGCATGGTTTA 8385002 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| |||||| || || || |||||||||||||| |||||| ||||| | Sbjct 8402599 ATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTT 8402540 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| ||||| ||||||| || |||| ||||| ||| ||||| || || || || ||| Sbjct 8402539 TCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 8402480 Query 133650 AAAATCTGCATG 133661 || ||||||||| Sbjct 8402479 AAGATCTGCATG 8402468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483363242711000