Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1660 172 8e-37 seq11 159 5e-33 seq3 131 2e-24 seq14 96.9 5e-14 seq6597 95.1 2e-13 >seq1660 Length=16444 Score = 172 bits (190), Expect = 8e-37 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| ||| |||| ||||| Sbjct 5322 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCCTCCAAGGCCATG 5375 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| |||| ||||||| | |||||| ||| Sbjct 5376 GGCATCATGAACTCCTTCGTSAGCGACATCTTCGAGCGCATCGCCGGTGAGGCCTCCCGC 5435 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 5436 CTGGCCCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 5495 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 5496 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 5544 >seq11 Length=13916851 Score = 159 bits (176), Expect = 5e-33 Identities = 177/231 (77%), Gaps = 10/231 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | |||||||||||||| || || ||| |||||||| | ||||| Sbjct 13382211 TACAAGGTGTTGAAGCAGGTGCACCCA-GACACG--GGGATCTCCTCCAA---GGCCATG 13382264 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||| | || || || ||||| Sbjct 13382265 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATAGCCAGTGAAGC--GTCGC 13382322 Query 725034 --CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| || |||||||||| ||| ||| | | | |||||||||||||| || | Sbjct 13382323 GGCTGGCGCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTCC 13382382 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||| | |||||||| ||||||||||||| Sbjct 13382383 GCCTGCTGCTGCCCGGCGAGCTGGCGAAACACGCCGTGTCCGAGGGCACCA 13382433 >seq3 Length=22537114 Score = 131 bits (144), Expect = 2e-24 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| | | ||||| ||||||||||| || ||||||||| || |||| || |||| Sbjct 16443013 CTCCAGCCGGGCCATGAGCATCATGAACTCTTTCGTCAACGACCTGTTCGAGCGGATCGC 16442954 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 ||||||||| || ||||| | | |||||||||| ||| ||| || | ||| | Sbjct 16442953 CACCGAGGCGTCCCGGCTGGCCCAGTACAACAAGCGCTCCACCATCACCAGCAGGGAGGT 16442894 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||||| || ||| | ||| || || ||||||| ||||||||| |||||||| Sbjct 16442893 GCAGACCGCCGTCCGGCTGCTGCTGCCGGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGG 16442834 Query 725138 CACCA 725142 ||||| Sbjct 16442833 CACCA 16442829 >seq14 Length=13523219 Score = 96.9 bits (106), Expect = 5e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| ||| || | ||| |||| |||| | |||||||||||| | || | |||| Sbjct 9107018 AGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGA 9107077 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 |||||||||||| |||| | |||||| | ||| |||||||||||||| ||| | || | Sbjct 9107078 TCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCC 9107137 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | || || || ||| | ||||||| || ||| |||| | || || | | || | Sbjct 9107138 TGTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGAC 9107197 Query 263093 TGTGGA 263098 |||||| Sbjct 9107198 TGTGGA 9107203 >seq6597 Length=1954 Score = 95.1 bits (104), Expect = 2e-13 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || |||||| | ||||| ||| | |||||||||| ||||| Sbjct 1172 GAGCCGCTGCTGAAAGAAAACCCGCAGCGCTTCGTCATCTTCCCCATCCAGTACCATGAC 1113 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||| || || |||||||| |||||||| Sbjct 1112 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCATCTTTCTGGACCGCAGAGGAGGT 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176892496243050