Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7 125 6e-24 seq3 82.4 7e-11 >seq7 Length=16146599 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | || ||| || |||| ||||||||||| || ||||| Sbjct 1869506 CTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCCAGCAAA 1869447 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||| ||| |||||| || | | | Sbjct 1869446 AATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACATT 1869387 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || ||||| |||| || ||||| Sbjct 1869386 CTCAATGGTGTCACTGGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGGGTCTTCAC 1869327 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1869326 AAAGATCTGCAT 1869315 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||| |||| ||| | || ||| || || |||||||| |||| | || || |||| Sbjct 1869755 CAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTC 1869696 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || || || || | ||||||||||| | ||| | || ||| ||||| Sbjct 1869695 TTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTC 1869636 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | ||| || ||| | | || | | ||||| || | || ||||||| ||||| || Sbjct 1869635 CTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 1869576 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| ||||||||||| |||||||| Sbjct 1869575 CTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| || ||||| |||| || ||| || | || ||||||||||| || || || Sbjct 1869962 CTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 1869903 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||| ||| |||||| || | | | Sbjct 1869902 GATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACATT 1869843 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || ||||| Sbjct 1869842 CTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTCTTGCCTGTGAGGGTCTTCAC 1869783 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1869782 AAAGATCTGCAT 1869771 >seq3 Length=22537114 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 44306 AGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCATCT 44364 ||| ||||||||||| || || || ||||||| |||||| ||| |||| ||| | | Sbjct 8323151 AGGGTGTATGTGGTCTATCTGTGGCATCCACGACCAGGGC-TGGGCAGAGAGACCTGTTT 8323209 Query 44365 ACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 ||| || | ||||||||||||||||| || ||| |||| |||||||| || Sbjct 8323210 TCGGAAAGATCCGCTACATGAACTACAAAGGCTGCCTCAGGAAGTTTGACGT 8323261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450739927387000