Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1094 111 1e-19 seq36 98.7 8e-16 >seq1094 Length=24016 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||||||| || |||| ||| ||||||| |||||| || ||||||| Sbjct 11446 CCAGACCACCTCCAGCTCTGCGTTCAGTTTGTCGAGCTTCACAAAGTCGTCTTTGTTGAT 11505 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 | | ||||| | ||| |||||||||||| ||||||||||||| |||||||| || Sbjct 11506 GATTTCACCTCCAGATTTCAGTCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCACTTGGT 11565 Query 77431 CACACC 77436 |||||| Sbjct 11566 CACACC 11571 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 77430 TCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCT 77489 || |||| ||||| |||||| ||||||| ||||| | |||| ||||||||| || |||| Sbjct 11848 TCTCACCGTTGATCGTGAACTTGCTGTCGGTGTAAAGAACCAACTTCTTGATGTTCTTCT 11907 Query 77490 CCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 | | ||||||||||||||||||| | ||||||||| Sbjct 11908 CTTTAGCTTGTTGCAGTGCTTTGCAGGCAGCCTGG 11942 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || ||||||| ||||||||||| ||| |||||| |||||||||||| || ||| | || Sbjct 13016 CTCCTCTGACGAACGCCCAGGCGTCTCGCTCTGATGCAAACTTCTTGAAAGAGGCAGATG 13075 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| || || || |||||||||||||||| Sbjct 13076 GGAATTTTTCCACCTGACTCTTACATTCATCCC 13108 >seq36 Length=4415687 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 87332 CTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAACA 87391 |||||| ||| || || ||| |||| || || || || |||||||||| |||||||||| Sbjct 2562252 CTCCCATTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGACTGTCAGTCCAGCAAACA 2562311 Query 87392 CAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||| || | || | | ||| || | |||||||||||||||||||||| Sbjct 2562312 CAGCACAGGTCAGGAACAAGGCTTGCAGCACAGTGGAGTATTCATAGAAGGTCA 2562365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397409860947625