Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7 125 6e-24 seq14 107 2e-18 >seq7 Length=16146599 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || ||||| |||| ||| | || || ||||| || || ||||||||| Sbjct 1869769 CCTCCTCTCAGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1869710 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| ||||| || |||||| | ||||||||||| || || || || Sbjct 1869709 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 1869650 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || ||| ||| || | |||| | ||||| ||| || || Sbjct 1869649 ATGCCCTCTTTGTCCTGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACC 1869590 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | ||||| ||||| |||||||||||||| |||||| || || Sbjct 1869589 TCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCATACCTCCT 1869536 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || ||||| | || || | || | ||| | || || |||||||| |||||||||||| Sbjct 1870000 TTTCCTCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCG 1869941 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | |||| | ||||| ||||| || || ||| | || || | ||| || || || Sbjct 1869940 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGA 1869881 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| |||||| ||| | | || | ||||| ||| || Sbjct 1869880 GGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCG 1869821 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || ||||| || | ||||| || || || ||||||||||| |||||| || || Sbjct 1869820 ACCTCCAGAGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATACCTCCT 1869764 >seq14 Length=13523219 Score = 107 bits (118), Expect = 2e-18 Identities = 264/397 (66%), Gaps = 5/397 (1%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || |||||||||||||| || ||||| | ||| || |||| |||||| || Sbjct 9106320 GGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAA 9106261 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 ||| || || | ||| || |||| || |||||||| ||| ||| ||| || | || | Sbjct 9106260 CAAGTCGGGGATCCACAAGCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGT 9106201 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | ||||| || | ||| ||||| || |||| |||| || Sbjct 9106200 GTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACATGGC 9106141 Query 131782 CATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || || | | || ||||| || | |||| || || |||||||||| || Sbjct 9106140 GAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGAC 9106081 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | || |||||| ||| ||||| | ||| || ||||||| ||||||||| || | Sbjct 9106080 TCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGT 9106021 Query 131899 GGCTCTGATTTTG-TGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGC 131957 | |||||| | ||| || | || || ||||| | | || ||||| || || | Sbjct 9106020 TGATCTGATGCAGCTGACCG-CCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCAC 9105962 Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 | | | || |||| ||| || || || | |||||| Sbjct 9105961 ACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTC 9105925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424885071091800