Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14 192 7e-44 seq6597 87.8 2e-12 seq11 86.0 7e-12 seq45 84.2 3e-11 >seq14 Length=13523219 Score = 192 bits (212), Expect = 7e-44 Identities = 898/1399 (64%), Gaps = 44/1399 (3%) Strand=Plus/Plus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||||| | || || |||||||| || || || || || || ||||||| Sbjct 9105840 GTTCACCCACGCGTCTCCTACGCTCTTCAACGCAGGAACCAACAGGCCTCAGCTGTCCAG 9105899 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 |||||||| || ||| ||||| ||| ||| |||| || |||| || || | | | Sbjct 9105900 CTGCTTCCTGCTCACCATGAAGGATGACAGCATCGACGGCATTTATGACACGCTGAAGCA 9105959 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATG--TGAGA 104491 |||||| | ||||| |||| ||||| || || || || || | || | ||| Sbjct 9105960 GTGTGCCCTCATCTCCAAGTCAGCTGGAGGAATCGGCGTGGCGGTCA--GCTGCATCAGA 9106017 Query 104492 GCCAATAA-ATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550 | | | || ||| || || || || | ||| | || | | || ||||| Sbjct 9106018 TCAACGGGGAGCTAC-ATTGCTGGCACCAACGGCAACTCAAACGGGCTGGTCCCCATGCT 9106076 Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAGGGATCTA 104609 | || | ||| ||| ||||||||||| | || ||||| | | ||| || | Sbjct 9106077 GAGAGTCTACAACAACACGGCGCGCTATGTCGACCA----GGGCGGCAACAAGAGACCCG 9106132 Query 104610 ------TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGC 104663 |||| | || || |||||||||||| || | | || ||||| ||| || Sbjct 9106133 GGGCCTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTGGAGCTGA 9106192 Query 104664 GTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATT 104722 ||| ||| | |||||| | | ||| | ||||| |||| || | ||||| Sbjct 9106193 AGAAGAACACAGGGAAGGAGGAG-CAAAGAGCCAGAGATCTTTTCTACGGCTTGTGGATC 9106251 Query 104723 CCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC 104782 || || | |||||||||||||| ||| | | |||||||| | ||||| | Sbjct 9106252 CCCGACTTGTTCATGAAGAGAGTCGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAGC 9106311 Query 104783 AAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTA 104841 || || || || ||| ||| | ||| ||||||||||| || ||||| |||| Sbjct 9106312 GAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTACACCCAGTA 9106370 Query 104842 CGAGGAAGAAGGTCGGGCGACTGCGACG-GTGCCAGCTGCCGATGTGTGGAAAGCTATTC 104900 ||| | || || |||| | ||| ||| ||| | ||||| | || | Sbjct 9106371 TGAGAAGGAGGGGCGGGTCAA-GCGTGTTGTGAAGGCTCAGCAGCTGTGGCACGCCGTCA 9106429 Query 104901 TCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAA 104960 || |||| || || ||||| |||||||| |||||||| |||||||||||||| ||| | Sbjct 9106430 TCGAGTCCCAGACGGAGACGGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGA 9106489 Query 104961 AGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGG 105020 |||| || ||| ||||| | || ||||| | ||| ||||| || |||||| | | Sbjct 9106490 AGAGCAACCAACAGAATCTTGGCACCATCAAATGCAGCAACCTCTGCACCGAAATCGTTG 9106549 Query 105021 AATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT 105080 ||| || | |||||| || || ||||| || || || ||||||||| || || Sbjct 9106550 AATACACCAGTGACGATGAGGTCGCCGTCTGTAATCTGGCCTCCATCGCTCTCAACATGT 9106609 Query 105081 ATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140 | || || ||| ||| ||||| | ||||||| | || || ||| | Sbjct 9106610 ACGTCACCCCCGAG---CGGACTTTTGACTTCAAAAAACTGGAGTCTGTGACCAAAGTTA 9106666 Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTC 105197 || ||| ||||| |||| | || || | || | ||||| || ||| ||| Sbjct 9106667 TCGTCAAGAACCTGAACAAGATCATAGAGATTAACTACTACCCAGTGCCCGAG---GCTG 9106723 Query 105198 GTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTAT 105257 ||| || || | | | ||| | |||||||| |||| || |||||| | || || | | Sbjct 9106724 ATAAGTCCAACAAGCGCCACAGGCCAATTGGAATCGGCGTCCAGGGTTTGGCCGACGCCT 9106783 Query 105258 TCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATAT 105317 |||| || || || | ||||| | || || || | || | || | Sbjct 9106784 TCATCCTGATGCGTTACCCCTTTGAAAGCCCAGAGGCTCAGCTGCTGAACATCCAGATCT 9106843 Query 105318 TTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAG--AGGTTGATGG 105375 |||||||||| || ||||||| || |||||||| | ||| |||||| |||| || Sbjct 9106844 TTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCAGCCGAGTTG--GG 9106901 Query 105376 TCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATG 105433 || || || || | || || | ||| | ||| |||||| | || || | || ||| Sbjct 9106902 CCCCTACGAGACATACGAAGGCTGTCCTG--TCAGCAAGGGCATCCTCCAGTACGACATG 9106959 Query 105434 TGGGAAGGTGA-GACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGG 105491 |||| || || | ||| | | |||| ||||||| || |||||| ||| Sbjct 9106960 TGGG-AGAAGACGCCCACCGACCTGTGGGACT-GGAAGCTGCTGAAGGAAAAGATCGCCA 9107017 Query 105492 AGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA 105551 || | || | | ||||| || || |||| || ||||| || ||||||||||| || | Sbjct 9107018 AGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGA 9107077 Query 105552 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCC 105611 || |||| || || || | | | || ||||||| | |||||||| | || || Sbjct 9107078 TCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCC 9107137 Query 105612 TCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTC 105671 | | ||||||||| ||| |||||| ||||| | | ||||| | |||| || | Sbjct 9107138 TGTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGAC 9107197 Query 105672 TCTGGTCCAAGGATATGAA 105690 | ||| | |||| ||||| Sbjct 9107198 TGTGGAGCGAGGAGATGAA 9107216 >seq6597 Length=1954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||| ||| | || | ||||| |||||| ||||| Sbjct 333 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTTCCATCTTCTGGCTGAAGAAGAGAGGT 274 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||||||| || || ||||||||||||||| ||| Sbjct 273 CTCATGCCCGGCCTGACCTTCTCCAACGAGCTCATC 238 >seq11 Length=13916851 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || || || |||| || || || || || |||||||||||||| ||||| | Sbjct 4879451 TGTGGCATGCCATCATCGAGTCACAGACAGAAACGGGAACACCATACATGCTCTACAAGG 4879510 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 ||||||| ||| ||||| || || ||||| |||| ||||| |||||| | Sbjct 4879511 ACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGT 4879570 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | ||||| || |||| | ||| |||||||||| Sbjct 4879571 GCACAGAGATAGTGGAGTACACAAGCAAAGATGAG 4879605 >seq45 Length=2253462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||||||| | | || ||||| ||| ||||| ||||||||||| ||||| ||| || Sbjct 2024710 TGAGCGAATTGTGGCTTTTGCTGCTGTGGAGGGAATCTTCTTCTCCGGTTCATTCGCTGC 2024651 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | |||||| |||||| |||| | ||||| || || ||||||||| ||||| || Sbjct 2024650 CATCTTTTGGCTGAAGAAGAGAGGATTAATGCCTGGGCTTACCTTCTCCAATGAGCTGAT 2024591 Query 94923 C 94923 | Sbjct 2024590 C 2024590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583191355511000