Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq15 293 7e-74 seq7 149 2e-30 seq21 107 6e-18 seq11 102 2e-16 >seq15 Length=13389401 Score = 293 bits (324), Expect = 7e-74 Identities = 749/1127 (66%), Gaps = 15/1127 (1%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || || ||||| || || || ||||||||||||| |||| ||| ||| || Sbjct 1599547 ATTGGCATTGATTTGGGAACCACCTATTCTTGTGTTGGGGTTTTCCAACATGGCAAAGTG 1599488 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || || ||||| ||||| || || || || ||||| || Sbjct 1599487 GAGATCATTGCCAACGACCAGGGCAACAGGACAACTCCCAGCTATGTGGCCTTTACRGAC 1599428 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||| | | ||||| ||| |||| || || || | ||| || || | ||||| Sbjct 1599427 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAACCCCACCAATACA 1599368 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAA-ATCTACACAATCTGA 349440 | ||||| || |||||||| || || |||| ||| |||| ||| | || || || Sbjct 1599367 ATATTTGARGCCAAGCGACTAATAGGAAGAAAGTTTAATGACTCCATCGTC-CAGTCCGA 1599309 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | |||| || ||||| | || | | |||| || || | || |||| Sbjct 1599308 CATGAAACTTTGGCCTTTCAAGGTGATCAGTGATAACGGA---AAGCCCAAAGTTCAGGT 1599252 Query 349501 TGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAG 349559 || |||||||| ||| | || || ||||| |||||||| || |||||||| | | Sbjct 1599251 GGAGTATAAAGGCGAA-ACCAAGGCCTTCTACCCTGAAGAAATCTCGTCAATGGTCCTGG 1599193 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 ||||||||||||| || ||||| || || | || ||| || | |||| || || | Sbjct 1599192 TTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGACAAAAGGTTTCAAATGCAGTCATCA 1599133 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || ||||| ||||| |||||| | ||| | || || || |||||||| || Sbjct 1599132 CAGTGCCAGCTTATTTCAATGATTCTCAGAGGCAAGCCACTAAGGATGCTGGAGTGATCT 1599073 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | ||| |||| || || || || |||||||| || ||||| ||||| || || Sbjct 1599072 CTGGTCTGAATATTCTGAGGATCATCAACGAACCCACAGCAGCAGCGATTGCCTACGGCT 1599013 Query 349740 TTGATAAA-ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 | |||||| | | || ||| || | || || |||||| | ||||| || || Sbjct 1599012 TAGATAAAGGTAAAAGA-GGAGAGCGCAARGTGCTCATCTTTGATCTCGGTGGAGGCACC 1598954 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||| || || | || || |||| || || || ||||| || ||||| ||||| || Sbjct 1598953 TTTGACGTGTCCATCCTGACCATTGAGGACGGCATCTTTGAGGTAAAAGCCACTGCAGGA 1598894 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || ||||| |||||||| || || ||||| ||||| | || || || | | ||| Sbjct 1598893 GACACACACCTTGGTGGGGAGGACTTTGACAATCGGATGGTCAGTCACTTCCTCGAGGAA 1598834 Query 349919 TTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGA 349978 ||||| | | || | || || | | ||| |||||| | | | || | Sbjct 1598833 TTTAAAAGAAAGTACAAGAAAGACATCAGCCAAAATAAGAGAGCAGTTAGGAGACTGCGC 1598774 Query 349979 ACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATT 350038 || || ||||| | || ||| | || | || || | ||||| || |||||||| Sbjct 1598773 ACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCAAGCACCCAGGCCAGCATTGAAATR 1598714 Query 350039 GATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAA 350098 || ||||| ||| |||| || |||| | || || ||| | || || ||||| || Sbjct 1598713 GACTCTCTGTTTGAGGGCATCGACTTCTACACCTCCATCACAAGGGCACGCTTTGAGGAG 1598654 Query 350099 TTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 | ||||| || || | |||| |||| || ||||| |||| || ||||| | Sbjct 1598653 CTCAACTCAGATCTCTTCAGGGGAACACTGGAGCCAGTGGAGAAAGCCCTACAAGATTCC 1598594 Query 350159 AAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 || ||| | || || |||| ||||| | || | |||||||| || ||| | |||| Sbjct 1598593 AAGATG--GATAAGTCCAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATTC 1598536 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATT 350275 | ||| | || |||| | || || || ||||||| ||||| | ||| || Sbjct 1598535 CCAAAATCCAGAAGTTCTTGCAAGATTTCTTRAATGGCAGAGAACTGAACAAGA-GTATC 1598477 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 || |||||||||||||| || |||||||| || || ||||| |||| Sbjct 1598476 AACCCAGATGAAGCTGTGGCTTATGGTGCAGCAGTCCAGGCTGCTAT 1598430 Score = 138 bits (152), Expect = 3e-27 Identities = 369/553 (67%), Gaps = 16/553 (3%) Strand=Plus/Plus Query 183246 ATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT 183305 || ||||| || || ||||||||||| || ||||||||||||||||| | | | | | Sbjct 1598430 ATAGCAGCCTGGACTGCTGCACCATAAGCCACAGCTTCATCTGGGTTGA-TACTCTTGTT 1598488 Query 183306 -AATTCTTTGCCATT-AAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTG 183363 | |||| ||||||| || |||| || ||| | || || ||||| |||||||| || | Sbjct 1598489 CAGTTCTCTGCCATTYAAGAAATCTTGCAAGAACTT-CTGGATTTTGGGAATTCTTGTGG 1598547 Query 183364 AACCACCGACTAATACTACTTCATCGATATT--ACTTTTACTAATTTGTGAATCTTTTAA 183421 | ||||| || | || | ||||| ||| || |||| | | || | ||||||| || Sbjct 1598548 AGCCACCAACCAGGACGATTTCATGGATCTTGGACTTATCC--ATCTTGGAATCTTGTAG 1598605 Query 183422 AACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCT 183481 |||| || || || |||| ||| || || | |||| | ||| || || | Sbjct 1598606 GGCTTTCTCCACTGGCTCCAGTGTTCCCCTGAAGAGATCTGAGTTGAGCTCCTCAAAGCG 1598665 Query 183482 TGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGA 183541 ||| || || | || | | ||||| || || | | | | || || |||||||| Sbjct 1598666 TGCCCTTGTGATGGAGGTGTAGAAGTCGATGCCCTCAAACAGAGAGTCYATTTCAATGCT 1598725 Query 183542 TGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACG 183601 | || || ||| || | || || || |||| ||||| ||||| | |||| | Sbjct 1598726 GGCCTGGGTGCTTGAGGACAGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCT 1598785 Query 183602 TAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAA 183661 | || ||| ||| | | || |||| || | |||||||||||||| | || Sbjct 1598786 AACTGCTCTCTTATTTTGGCTGATGTCTTTCTTGTACTTTCTTTTAAATTCCTCGAGGAA 1598845 Query 183662 ATG-TTGAAGTAATC---TTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAG 183717 || ||| ||| ||| ||||| || || ||||| | ||||| || || |||| Sbjct 1598846 GTGACTGA--CCATCCGATTG--TCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGCAG 1598901 Query 183718 TAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCAC 183777 | ||||| || ||||| || ||||| ||||| | | || || || ||||| || || | Sbjct 1598902 TGGCTTTTACCTCAAAGATGCCGTCCTCAATGGTCAGGATGGACACGTCAAAGGTGCCTC 1598961 Query 183778 CACCCAAATCAAA 183790 |||| | |||||| Sbjct 1598962 CACCGAGATCAAA 1598974 >seq7 Length=16146599 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||||||||| ||||| || || || | || || |||||| Sbjct 1869982 AGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 1869923 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| || | ||||| |||||||| || ||||| |||||| Sbjct 1869922 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1869863 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || |||||||| ||||| ||||| | || || || || || || || | ||| Sbjct 1869862 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTC 1869803 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1869802 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 >seq21 Length=10546925 Score = 107 bits (118), Expect = 6e-18 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || || || || || || || || ||||| |||||||| || || ||||||| Sbjct 2489958 ATGCAGTCATCACGGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 2489899 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| |||||| ||| | ||||| || | || || ||||| |||||||||||||| | Sbjct 2489898 CTGGAGTCATTGCTGGGCTCAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 2489839 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaa 349763 |||| ||||| || ||||||| | || || || ||| Sbjct 2489838 TTGCTTATGGCCTGGATAAAAAG-GTAACTAACAAA 2489804 >seq11 Length=13916851 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||||||||| ||||| || || |||||||| | || ||| ||||| || |||| Sbjct 13377018 ATGCTGTTATTACAGTACCTGCATACTTTAATGACTCGCAACGTCAAGCAACCAAGGATG 13377077 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | || | || |||||||| ||||||| || ||||| || ||||| ||||| | Sbjct 13377078 CTGGAACTATCTCTGGTTTAAATGTGTTAAGAATCATAAATGAGCCTACTGCAGCAGCCA 13377137 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || ||||| | || |||| Sbjct 13377138 TCGCTTATGGTTTGGACAAAA 13377158 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || | |||||||| || ||||| ||||| || ||||| || ||||| Sbjct 8385147 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8385088 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || || || ||||| || | ||||| || || || Sbjct 8385087 TTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGG 8385028 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 8385027 GTCTTCACGAAGATCTGCAT 8385008 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || | |||||||| || ||||| ||||| || ||||| || ||||| Sbjct 8402608 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8402549 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || ||||| || || || | ||||| || || || Sbjct 8402548 TTGACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGG 8402489 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 8402488 GTCTTCACGAAGATCTGCAT 8402469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515069479773575