Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq14 306 4e-78 seq6597 100 3e-16 seq11 87.8 2e-12 seq45 82.4 8e-11 >seq14 Length=13523219 Score = 306 bits (338), Expect = 4e-78 Identities = 885/1339 (66%), Gaps = 55/1339 (4%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| |||| |||| || ||| |||||||||| | ||||| | ||||| | |||| Sbjct 9107150 AACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCG 9107091 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 9107090 TTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTC 9107031 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || ||| | ||||| |||| || | |||||| | || | | | Sbjct 9107030 CTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGC 9106971 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTC 78741 | || |||||||||| || ||||| |||| | | || | || | | | ||| Sbjct 9106970 GTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGACAGCCTTCGTATGTC 9106911 Query 78742 TCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACA 78801 ||||| | ||| ||| || || ||||| | | |||||| |||| ||| | Sbjct 9106910 TCGTAGGGGCCCAACTCGGCTGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATG 9106851 Query 78802 GCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT-TGGTCTCGTCGAACGA--AAGGCCG 78858 | ||| ||||| |||| ||| | |||| ||| || || || | || || Sbjct 9106850 GTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGGCTT-TCAAAGGGGTAACGC-- 9106794 Query 78859 AGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918 | || |||||| | ||||||| |||||||||||||| | || || | ||||||| || Sbjct 9106793 ATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTGTGGCGCTTG 9106734 Query 78919 TTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGG 78975 ||| ||| | ||||||| | ||||| |||| || |||| ||||||| Sbjct 9106733 TTGGACTTAT---CAGCCTCGGGCACTGGGTAGTAGTTAATCTCTATGATCTTGTTCAGG 9106677 Query 78976 TTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GATTT 79029 || | |||||| | ||||| | || ||| ||| |||||| | | Sbjct 9106676 TT---CTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAAAGTCCGCTCG 9106620 Query 79030 CCTTTGATGAAAGTCGGTAGGCACAGCGATG----CCAGGTTGCACACGGCCGTCTCGTC 79085 ||| | | | || | | ||||||| |||| || || ||||| ||| || Sbjct 9106619 GGGGTGACGTACAT--GTTG--AGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATC 9106564 Query 79086 CGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTT 79145 || | || | |||||| ||||| | || | ||||||||||| | || Sbjct 9106563 GTCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATT 9106504 Query 79146 CTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || |||||||||||| ||| |||||||| ||||| ||||||||| || || ||||| Sbjct 9106503 CTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTCTC 9106444 Query 79206 AACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCG 79265 ||| || || ||| ||| ||| | | | | ||| ||||| |||| ||| Sbjct 9106443 CGTCTGGGACTCGATGACGGCGTGCCACAGCTGCTGAGCCTTCACAACACGCTTGACCCG 9106384 Query 79266 ACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAG 79325 |||| | ||| ||| | || | || ||||||| || ||| ||| Sbjct 9106383 CCCCTCCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAG 9106324 Query 79326 GCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCAT 79385 || ||||||||| || |||||||| |||||||| || |||| || ||| ||| Sbjct 9106323 CCCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCAT 9106264 Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 ||| | ||| |||||||||| | |||| ||| || || | | | |||||| | | Sbjct 9106263 GAACAAGTCGGGGATCCACAAG-CCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTT-C 9106206 Query 79445 CCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 |||| |||| |||||| || ||||| | | ||| |||||| |||||||| || Sbjct 9106205 CCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTAC 9106146 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 |||||||| | || | |||| ||||||||||| ||| || || |||||||||||| Sbjct 9106145 ATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTG 9106086 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 | |||| |||||||| || | |||| | | |||||| || || | |||| Sbjct 9106085 TAGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCC----AGCAATGTA 9106030 Query 79624 CCGCTCGCCCGAATGTTC-GA-GCAG-TG-----GATTCCGATGCCCCCGGACCACTTGG 79675 |||| |||| || || || |||| || | ||||| || || | |||||| Sbjct 9106029 --GCTC-CCCG-TTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGG 9105974 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAG 79735 ||||| | || |||| ||| ||||| || || ||||| ||||| ||| |||||||| | Sbjct 9105973 AGATGAGGGCACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGG 9105914 Query 79736 CGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCG 79795 || |||||||||||| |||| ||| || |||| || || ||||||||||| || || | Sbjct 9105913 TGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGAG 9105854 Query 79796 TCGCGTGCGTGAAGAACTT 79814 |||||| ||||| |||| Sbjct 9105853 ACGCGTGGGTGAACCACTT 9105835 Score = 237 bits (262), Expect = 2e-57 Identities = 870/1341 (65%), Gaps = 61/1341 (5%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| ||||| | |||||| ||||| |||||| | || || || ||||| Sbjct 9105810 CGAGACCTACAACCTGCTCTCAGAGAAGTGGTTCACCCACGCGTCTCCTACGCTCTTCAA 9105869 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 ||| || || |||| || ||| |||| ||||| ||||| | | |||||||||||||| Sbjct 9105870 CGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCACCATGAAGGATGACAG 9105929 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || ||||| || || ||||| ||| |||| || | ||||||||||| | || || Sbjct 9105930 CATCGACGGCATTTATGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCAGCTGGAGG 9105989 Query 19345 TATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGAC 19398 ||||| | || |||| ||| | || | || | || ||| || Sbjct 9105990 AATCGGCGTGGCGGTCAGCTGC------ATCAGATCAACGGGGAGCTACATTGCTGGCAC 9106043 Query 19399 GAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| | |||| | ||||| ||||| | |||| |||||||||||| | || Sbjct 9106044 CAACGGCAACTCAAACGGGCTGGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGCTA 9106103 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 ||| ||||||| ||| ||| | || | |||||||| ||||| ||||||||||| Sbjct 9106104 TGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAGCCATGGCA 9106163 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAAC-CAGGGTGACGAGGAG--ATGCG 19575 | ||||| | || ||||| || ||| |||| ||||| | |||||| | | | Sbjct 9106164 CTTTGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGG-AAGGAGGAGCAAAGAG 9106222 Query 19576 CTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634 | | || || ||| |||| ||||||||| || ||| | |||||| ||| || |||| Sbjct 9106223 C--CAGAGATCTTTTCTACGG-CTTGTGGATCCCCGACTTGTTCATGAAGAGAGTCGAGA 9106279 Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | || ||| |||||||| || ||| ||||| || || ||| || | Sbjct 9106280 GCAACCAGGACTGGTCTCTGATGTGTCCCAGCGAGTGCCCCGGGCTGGACGAGTGCTGGG 9106339 Query 19695 GCGAGGCGTTCAATGAGTTGTAC-CGGACT-TACGTAGCCCAGGGCCGGTTCAAGAAGGT 19752 | |||| ||| | || | ||| | | | | | || |||| ||| ||||| || Sbjct 9106340 GGGAGGAGTTTGAGAAGCTCTACACCCAGTATGAGAAG--GAGGGGCGGGTCAAGCGTGT 9106397 Query 19753 GGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACC 19812 || ||| | | | | ||| || |||| || | |||| ||||| || ||||| Sbjct 9106398 TGTGAAGGCTCAGCAGCTGTGGCACGCCGTCATCGAGTCCCAGACGGAGACGGGTACACC 9106457 Query 19813 GTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGAT 19872 ||||||| ||||| |||||| ||| ||| || || |||| | ||| | || Sbjct 9106458 GTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTTGGCACCAT 9106517 Query 19873 CAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGT 19932 ||| | |||||| || || |||||| | || ||| || ||| ||||| Sbjct 9106518 CAAATGCAGCAACCTCTGCACCGAAATCGTTGAATACACCAGTGACGATGAGGTCGCCGT 9106577 Query 19933 GTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCC------TCCTTCGA 19986 ||||||||||| ||| | || | | ||||| || || | || || Sbjct 9106578 CTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCA---CCCCCGAGCGGACTTTTGA 9106634 Query 19987 CTTTGCCAAATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCAT 20043 ||| ||| || | |||||| | |||||| | || ||||| |||| Sbjct 9106635 CTTCAAAAAACTGGAGTCTGTGACCAAAGTTATCGTCAAG---AACCTGAACAAGATCAT 9106691 Query 20044 CGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCC 20100 || |||| ||||| | ||||||| | ||||| || | ||||||| |||| Sbjct 9106692 AGAGATTAACTACTACCCAGTGCCCGAGGCTG---ATAAGTCCAACAAGCGCCACAGGCC 9106748 Query 20101 GATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGA 20160 || | |||||||||||||| ||||||||| ||||| || | | | | || || Sbjct 9106749 AATTGGAATCGGCGTCCAGGGTTTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGA 9106808 Query 20161 CGATCCCA-AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCC 20219 | |||| |||| | ||| |||| ||||| ||| || | ||| |||| || Sbjct 9106809 -AAGCCCAGAGGCTCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGC-- 9106865 Query 20220 TCCTGGAATCG---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGT 20276 |||||| || ||||| || || ||| ||||| |||||||| | | | || | Sbjct 9106866 -CCTGGAGGCGAGCTGCGAGCTGGCAGCCGAGTTGGGCCCCTACGAGACATACGAAGGCT 9106924 Query 20277 CGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGA-GAAT 20329 || | | |||| ||||||||| ||||||||| | || ||| || | Sbjct 9106925 GTCCTGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGT 9106984 Query 20330 GAGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTC 20389 | | | | ||| || |||| ||||| | ||||| | | ||| |||| Sbjct 9106985 GGGACTGGAAGC-TGCTGAAGGAAAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTG 9107043 Query 20390 GTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAG 20449 | || || ||||| || ||||| |||||||||||| |||| ||||||||| | ||||| Sbjct 9107044 CTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 9107103 Query 20450 CCGTACACGACCAACATCTAC 20470 | ||||| | |||||||||| Sbjct 9107104 GCCTACACCAGCAACATCTAC 9107124 >seq6597 Length=1954 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| |||||| | | || |||||||| || ||| | || Sbjct 333 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTTCCATCTTCTGGCTGAAGAAGAGAGGT 274 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 |||||||| ||||||| |||||||||||||| || Sbjct 273 CTCATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 239 >seq11 Length=13916851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| ||| || ||||||||||| | |||| ||||||||||||| | Sbjct 4879580 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 4879521 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||| || || || || || Sbjct 4879520 TTGCAGGCGTCCTTGTAGAGCATGTATGGTGTTCCCGTTTC 4879480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||||||||| | || ||| ||||| |||| ||||||||| || || Sbjct 4880960 GTAGATGTTGCTGGTGTACGGCTCAATAGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 4880901 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 || || |||||||| || | || ||| |||| || |||||| Sbjct 4880900 AGCTGTAGGCATGGGGGCCAAGAGCAGACTGTTCCTAATGCCATGC 4880855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 20385 TGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTT 20444 ||||| | || |||||||| || || || || ||||||||| |||| ||||| ||| || Sbjct 4880875 TGCTCTTGGCCCCCATGCCTACAGCTTCCACTGCCCAGATCCTGGGCAACAATGAGTCTA 4880934 Query 20445 TCGAGCCGTACACGACCAACATCTAC 20470 | ||||||||||| | |||||||||| Sbjct 4880935 TTGAGCCGTACACCAGCAACATCTAC 4880960 >seq45 Length=2253462 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 |||||||| ||| ||||| |||||||||||||| || || ||| ||| || || ||||| Sbjct 2024697 GCTTTTGC-TGCTGTGGAGGGAATCTTCTTCTCCGGTTCATTCGCTGCCATCTTTTGGCT 2024639 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | || | ||||| || || | |||||||| |||||||| | |||| || Sbjct 2024638 GAAGAAGAGAGGATTAATGCCTGGGCTTACCTTCTCCAATGAGCTGATCAGCAGGGATGA 2024579 Query 60110 GG 60111 || Sbjct 2024578 GG 2024577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548459491266000