Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14 192 6e-44 seq45 98.7 1e-15 seq17 91.5 2e-13 seq8 86.0 7e-12 >seq14 Length=13523219 Score = 192 bits (212), Expect = 6e-44 Identities = 474/705 (67%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || ||||| | || || || |||||||| || || || |||||| || Sbjct 9105835 AAGTGGTTCACCCACGCGTCTCCTACGCTCTTCAACGCAGGAACCAACAGGCCTCAGCTG 9105894 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | | |||||||||||| ||||||||||| || || ||||| Sbjct 9105895 TCCAGCTGCTTCCTGCTCACCATGAAGGATGACAGCATCGACGGCATTTATGACACGCTG 9105954 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| ||||||||| ||||||||||| | || || ||||| | | ||| | Sbjct 9105955 AAGCAGTGTGCCCTCATCTCCAAGTCAGCTGGAGGAATCGGCGTGGCGGTCAGCT---GC 9106011 Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 || | | ||||| | | || || || |||||| | | | || | || || Sbjct 9106012 ATCAGATC-AACGGGGAGCTACATTGCTGGCACCAACGGCAACTCAAACGGGCTGGTCCC 9106070 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| | |||| |||||||||||| || || ||| ||||||| || ||| | Sbjct 9106071 CATGCTGAGAGTCTACAACAACACGGCGCGCTATGTCGACCAGGGCGGCAACAAGAGACC 9106130 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 ||| | |||||||| ||||| ||||| |||||| ||| | | || || || ||||| Sbjct 9106131 CGGGGCCTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTGTTTGACTTCCTGGAGCT 9106190 Query 53623 GCGTCTGAA-TCAGGGTGACGAAGAG--ATGCGCTGCCGTGACCTGTT-TACAGCTCTGT 53678 | ||| ||||| | || ||| | | || | | || || || ||| ||| ||| Sbjct 9106191 GAAGAAGAACACAGGG-AAGGAGGAGCAAAGAGC--CAGAGATCTTTTCTACGGCT-TGT 9106246 Query 53679 GGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCC 53738 |||| || ||| | |||||| | | || |||| || |||| |||| |||||||| | Sbjct 9106247 GGATCCCCGACTTGTTCATGAAGAGAGTCGAGAGCAACCAGGACTGGTCTCTGATGTGTC 9106306 Query 53739 CGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGG 53797 | | |||||||||||| || | | ||| || || ||||||||| | || | || Sbjct 9106307 CCAGCGAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTACACC 9106365 Query 53798 ACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCA 53857 ||| | |||| || |||| || ||||| | || | ||| | || Sbjct 9106366 CAGTATGAGAAGGAGGGGCGGGTCAAGCGTGTTGTGAAGGCTCAGCAGCTGTGGCACGCC 9106425 Query 53858 ATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAAC 53917 || || || |||| ||||||||| || ||||||||| ||||| || | |||| Sbjct 9106426 GTCATCGAGTCCCAGACGGAGACGGGTACACCGTACATGCTGTACAAAGACGCCTGCAAC 9106485 Query 53918 GAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| |||| | ||| |||||||| |||||| Sbjct 9106486 AGGAAGAGCAACCAACAGAATCTTGGCACCATCAAATGCAGCAAC 9106530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 9107037 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 9107096 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| ||| || ||| | || |||||| || Sbjct 9107097 CATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTGTCCGGAGAGTTTCAGAT 9107156 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 9107157 CGTCAACCCTCATCTGCTCAAAGACCTG 9107184 >seq45 Length=2253462 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| ||||| || || | ||| |||||||| | ||| | ||||||| Sbjct 2024579 TCATCCCTGCTGATCAGCTCATTGGAGAAGGTAAGCCCAGGCATTAATCCTCTCTTCTTC 2024638 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||||||| ||| ||||| ||||||||| || || ||| ||||| || Sbjct 2024639 AGCCAAAAGATGGCAGCGAATGAACCGGAGAAGAAGATTCCCTCCACAGCAGCAAAAGCC 2024698 Query 74892 ACAA 74895 |||| Sbjct 2024699 ACAA 2024702 >seq17 Length=12622828 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || |||||||||| ||| |||||||| ||||| ||| | || ||||| || || Sbjct 10919424 GTAAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 10919483 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| |||||| |||||||||||| || |||||||| ||| Sbjct 10919484 CCGAGAGGCTGCAGGATGTTCACGTTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACA 10919543 Query 117425 ATCGT 117429 || || Sbjct 10919544 ATGGT 10919548 >seq8 Length=15448865 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| || | |||||| | ||||||||||| || || |||||||||||| Sbjct 8891675 GTGAAGATGTAACGAGGGCTGGCAGAGTCCTTGCCACCGTGCAACCTCGTTCCAAACTGA 8891734 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | |||||| ||||| || ||||| |||||| || Sbjct 8891735 CCCAGA-GGCTGCAGCAGGTTCATATTGTTGCTTCCCACAAAGTTCTGGGCCAAACCAAC 8891793 Query 152148 AATCGT 152153 ||| || Sbjct 8891794 AATGGT 8891799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547150847095000