Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 208 9e-49 seq7 178 1e-39 seq11 127 2e-24 seq17 82.4 9e-11 >seq14 Length=13523219 Score = 208 bits (230), Expect = 9e-49 Identities = 916/1425 (64%), Gaps = 65/1425 (5%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| ||||| |||||| Sbjct 9107111 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 9107052 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513 ||| | | || ||| |||| || ||||||||| ||| | || || | || Sbjct 9107051 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTC 9106992 Query 80514 CCAAAAATCAACCCCAACGCTGTGACC--------CCACATGTCGTGCTGCAAGATGCCC 80565 | | || || || | ||| | ||||||||||| ||| | ||||||| Sbjct 9106991 C----AGTC--CCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 9106938 Query 80566 T--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCC--GTCTTGGCCAGCTC 80621 | | ||| ||| | || || | |||||||| |||||| | | || |||||||| Sbjct 9106937 TTGCTGACA--GGACAGCCTTCGTATGTCTCGTAGGGGCCCAACTCGGCT--GCCAGCTC 9106882 Query 80622 ACA---CGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACC 80678 || || ||||| |||| |||| || ||| |||||||| |||||| | Sbjct 9106881 GCAGCTCGCCTCCA---GGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAG-CA 9106826 Query 80679 GC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCT 80737 || | |||| |||| || || | | | ||||| ||||| |||| |||| |||| Sbjct 9106825 GCTGAGCCTCTGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCT 9106766 Query 80738 GAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGT 80797 | |||||||| | || || | |||||||||||| || || ||||| || | ||||| Sbjct 9106765 GGACGCCGATTCCAATTGGCCTGTGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGT 9106706 Query 80798 AAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTG-TAACAACCCGTGTAACATCATGA 80856 | ||||| | || |||| ||||||||| | || | ||| || ||| | Sbjct 9106705 AGTAGTTAATCTCTATGATCTTGTTCAGGTT-CTTGACGATAACTTTGGTCACAGACTCC 9106647 Query 80857 AGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGA-AGGCTCAG------GGA 80909 ||||| | ||||| || || || || || || | | | | || ||| Sbjct 9106646 AGTTTTTTGAAGTCAAA--AGT--CCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGA 9106591 Query 80910 CGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAA 80969 |||||||| || ||||| ||||| || || || | || |||||||| ||||| | Sbjct 9106590 GGCCAGATTACAGACGGCGACCTCATCGTCACTGGTGTATTCAACGATTTCGGTGCAGAG 9106531 Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || | || || || || || || | ||||| ||| |||||| ||||| || Sbjct 9106530 GTTGCTGCATTTGATGGTGCCAAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 9106471 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 ||| ||||||||| ||||| ||||| ||| |||| || || ||||| ||| | || Sbjct 9106470 GTACAGCATGTACGGTGTACCCGTCTCCGTCTGGGACTCGATGACGGCGTGCCACAGCTG 9106411 Query 81090 GCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 | ||||| || || ||| || || || | |||||| || ||| ||||| Sbjct 9106410 CTGAGCCTTCACAACACGCTT---GACCCGCCCCTCCTTCTCATACTGGGTGTAGAGCTT 9106354 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | || |||| | || || || | ||||||||| | || |||||||| Sbjct 9106353 C-TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGAG 9106295 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 |||||| || | |||| || ||||||||| ||| |||||||| | | || || Sbjct 9106294 ACCAGTCCTGGTTGCTCTCGACTCTCTTCATGAACAAGTCGGGGATCCACAAGCCGTAGA 9106235 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTG-GTTGAGGCGCAACTCGAGAAAGTCC 81324 | || || | | | |||||| | ||||| ||| || ||| || ||||| Sbjct 9106234 AAAGATCTCTGGCTCTTTGCTCCTCCT-TCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCA 9106176 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTGCGACGG 81378 | | ||| |||||||||||||| |||| ||||| | ||| |||| | Sbjct 9106175 AACACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTG---TTG 9106119 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||||| ||| || || || || ||| | || | || ||| |||| | || Sbjct 9106118 CCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACCAGCCCG 9106059 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | ||| | ||||| || || | || |||| | | | | ||||| | Sbjct 9106058 TTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCCCCGTTGATCTGATGCAGCTGACCGCC 9105999 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 | ||||| || || | |||| || || | |||||| | |||| || |||||||| Sbjct 9105998 ACGCCGATTCCTCCAGCTGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCATAAATG 9105939 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 || |||||||| || | |||||| |||| ||| ||||| |||| |||||| || || Sbjct 9105938 CCGTCGATGCTGTCATCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTG 9105879 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || || ||||| || || || | |||||| |||| | | ||| | ||||| Sbjct 9105878 GTTCCTGCGTTGAAGAGCGTAGGAGACGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTG 9105819 Query 81679 TAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 ||||| || || | |||| | ||| | ||| ||||| | ||| || | ||| | Sbjct 9105818 TAGGTCTCGATGGCGGCGTCG-ATAGCTGTTTTGTGGATACCAACAGCCACTCTCATGAG 9105760 Query 81738 CATGTACTGGGGCGTCTCGCCTGCGTTCAGGTACATCTTCTGCAA 81782 ||||| ||| ||| |||| | | || || |||||| |||| Sbjct 9105759 CATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAGCAA 9105715 >seq7 Length=16146599 Score = 178 bits (196), Expect = 1e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || ||||||||||| || || || ||||| ||| | || Sbjct 1869543 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 1869602 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| ||||| |||||||| ||||| || |||||||||||| Sbjct 1869603 GACACCATTGAAAATGTTAAGGCCAAAATCCAGGACAAAGAGGGCATCCCTCCAGACCAG 1869662 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || || | || || || | ||||| || Sbjct 1869663 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 1869722 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || ||||| ||||||||||| Sbjct 1869723 ATCCAGAAAGAGTCCACCCTCCATCTGGTCTTGCGTCT 1869760 Score = 152 bits (168), Expect = 6e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || ||| | ||||| ||| | || Sbjct 1869315 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCCAGT 1869374 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || ||||| || ||||| ||||| || || ||||| |||||| Sbjct 1869375 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1869434 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| ||||| || || || | || ||||| |||| || || Sbjct 1869435 CAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCAGATTACAAC 1869494 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || ||||| || Sbjct 1869495 ATCCAGAAGGAGTCCACCCTCCATCTTGT 1869523 >seq11 Length=13916851 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| | || Sbjct 8402469 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 8402528 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 8402529 GACACCATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8402588 Query 27526 CAGCGTCTAATTTTTGCTGG 27545 ||| | || || |||||||| Sbjct 8402589 CAGAGGCTGATCTTTGCTGG 8402608 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||| ||| | || Sbjct 8385008 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 8385067 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | |||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 8385068 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 8385127 Query 27526 CAGCGTCTAATTTTTGCTGG 27545 ||| | || || |||||||| Sbjct 8385128 CAGAGGCTGATCTTTGCTGG 8385147 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || || ||||||| ||| || || || || ||||| || | |||||| Sbjct 4879588 ACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 4879529 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || || || || |||||||| Sbjct 4879528 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTTCCCGTTTCTGTCTGTGACT 4879469 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||| | ||| | || | ||||| ||||| Sbjct 4879468 CGATGATGGCATGCCACAGCTGCTGAGCCTTCACCAC 4879432 >seq17 Length=12622828 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 10919548 ACCATTGTGAACTTGGCCCAGAACTTTGTGGGCAGTAACAACGTGAACATCCTGCAGCC- 10919490 Query 32185 TCT-GGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||| || |||||||| || || || || ||||| |||||||| ||| | |||||||| Sbjct 10919489 TCTCGGTCAGTTTGGTACTCGCATCAATGGAGGCAAAGATGCTGCCAGCCCTCGTTACAT 10919430 Query 32244 CTTCACC 32250 ||| ||| Sbjct 10919429 CTTTACC 10919423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570242497418000