Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7 185 2e-41 seq11 105 2e-17 seq1 89.7 1e-12 >seq7 Length=16146599 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||||||||||||||| || || || | ||||| | |||||| Sbjct 1869982 AGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGGCCATCT 1869923 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||||||||| | |||||||| ||| Sbjct 1869922 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1869863 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || |||||||| | || ||||| |||||||| ||| Sbjct 1869862 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGTGATGGTC 1869803 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 1869802 TTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| ||||| | ||||| | || ||| Sbjct 1869526 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCGTCT 1869467 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || || | || ||||||||||| | |||||||| ||| Sbjct 1869466 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1869407 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || ||||||||| | || ||||| | |||||| ||| Sbjct 1869406 TGGATCTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAAGTGATGGTC 1869347 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 1869346 TTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 1869312 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || || ||||||||||| |||||||| || || | || || | || ||||| Sbjct 1869752 GACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTC 1869693 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 |||||||||||| |||||||| || || || ||||| ||||| | || || |||||||| Sbjct 1869692 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTG 1869633 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| || || || ||||| ||||||||| | || ||||| || ||||| ||||| Sbjct 1869632 GATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTT 1869573 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| | |||||| Sbjct 1869572 GCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 >seq11 Length=13916851 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || | || || || || |||| |||||||||||||||||||| Sbjct 8402608 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8402549 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| ||||||||| | ||||||||||| ||||| ||||| || ||||| Sbjct 8402548 TTGACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGG 8402489 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || Sbjct 8402488 GTCTTCACGAAGATCTGCATGTT 8402466 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || | || || || || |||| |||||||||||||||||||| Sbjct 8385147 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8385088 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || ||||||||| | || ||||| || ||||| ||||| || || || Sbjct 8385087 TTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGG 8385028 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 8385027 GTCTTCACGAAGATCTGCAT 8385008 >seq1 Length=23627241 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| | || ||| ||| |||||||||||| Sbjct 7736275 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGGCACAAC 7736334 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| ||| | ||| |||| |||| Sbjct 7736335 TATGTGAGAAAAGTGGCTGAGACGGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-C 7736391 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || || || || || || || |||||||| | ||| | || Sbjct 7736392 AATGTGGCAGGAATGGTCTTAGCTGGCTCTGCCGACTTCAAGACTGAACTCAGTCAGTCC 7736451 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 7736452 GACATGTTTGACCC 7736465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159010538176625