Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq13 140 3e-28 seq22 109 4e-19 >seq13 Length=13670824 Score = 140 bits (154), Expect = 3e-28 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| |||||| |||||||| ||||| || | |||||||||||| || || || Sbjct 11903247 AGTCCCGTGATGTGAGCGATCATGTAGGTGAGAAGTGCGTAGCTGGCGATATTGAAAGGG 11903188 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||| || || || | |||||| ||||| ||||| ||||| || ||| || Sbjct 11903187 ACGCCCAGACCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGATC 11903128 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTG 29890 ||||| ||||| || | ||| ||||| || || || |||||||| || |||| || Sbjct 11903127 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCTGTG 11903071 Score = 129 bits (142), Expect = 5e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| ||||||||||| |||||||| || | | ||| Sbjct 11902505 AAGTGCCTCCACTGGAAACCGTACACGGGTCCCAGGTCGCCCTCTTCTCTTTCCGTGAAC 11902446 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || || |||| || | || || |||||||| ||||||||||| ||||| ||||| Sbjct 11902445 CCGAGATTATCCAGGAACTGTCGAGACCCGTTGGCTTCCCAGATCTTCACCCCTTTCTCT 11902386 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 |||||||| |||| ||| || ||||| Sbjct 11902385 GAGAGCTCCTTGGCGTTGGTTGACCC 11902360 >seq22 Length=10337708 Score = 109 bits (120), Expect = 4e-19 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 || |||||||||||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 10258028 CTGCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGA 10258087 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| |||||||| ||||| |||||| Sbjct 10258088 GAACCACGTCTTCCTGCCCATGATCACCACATTCTGTTTACCT 10258130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| ||||||||||| ||||| | || ||||||||||| |||| ||| |||||| | Sbjct 10259393 AGTCTGACCGGATGCCAGGGCAGGTTCCCCTTGTTCCCGATCCCCAGGTCAGGACACACC 10259452 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCAT 114531 |||||||| ||||| || ||| | | ||| Sbjct 10259453 GCCACGATTCCGTTGAGCATGCGAGACAT 10259481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406116050164150