Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq14 473 2e-128 seq11 95.1 2e-14 >seq14 Length=13523219 Score = 473 bits (524), Expect = 2e-128 Identities = 1288/1961 (66%), Gaps = 23/1961 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 || || || || || |||||| | ||||| || | || | || |||||||| || Sbjct 9107219 TTTTTCATCTCCTCGCTCCACAGTCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 9107160 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| ||||| |||| || || || ||||| || || ||||| || | || Sbjct 9107159 ACGATCTGAAACTCTCCGGACAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 9107100 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 9107099 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 9107040 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || || | ||| || || || || ||||| ||||| || Sbjct 9107039 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCCACAGG 9106980 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || || || || | || Sbjct 9106979 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACAGGACAGCCT 9106920 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | ||||| || || || || || | | || || || || ||||| |||| || Sbjct 9106919 TCGTATGTCTCGTAGGGGCCCAACTCGGCT---GCCAGCTCGCAGCTCGCCTCCAGGGCG 9106863 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| || || || || || |||| | || || || || || || ||||| Sbjct 9106862 GCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGAGCCTCTGGGCTTTCAAAG 9106803 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || ||| | | || || ||||| || || || ||||| || || || ||||| || || Sbjct 9106802 GGGTAACGCATCAGGATGAAGGCGTCGGCCAAACCCTGGACGCCGATTCCAATTGGCCTG 9106743 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| ||||| | | ||| || || | || || || ||||| ||||| || || Sbjct 9106742 TGGCGCTTGTTGGACTTATCAGCCTCGGGCACTGGGTAGTAGTTAATCTCTATGATCTTG 9106683 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || || || | || | ||||| ||| || ||||| || ||||| | | Sbjct 9106682 TTCAGGTTCTTGACGATAACTTTGGTCACAGACTCCAGTTTTTTGAAGTCAAAAGTCCGC 9106623 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||||| | ||| || || || |||||||| || || ||||||| Sbjct 9106622 TCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACAGACGGCGACCTCATCG 9106563 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| |||| | || ||||| || || || || |||||||| ||||| ||||| Sbjct 9106562 TCACTGGTGTATTCAACGATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAAGATTC 9106503 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 |||||||||||||| | ||||| | ||| || || || || |||| || || || || Sbjct 9106502 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCCGTCTCC 9106443 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| | | | ||| | | || ||| || | | | ||| || Sbjct 9106442 GTCTGGGACTCGATGACGGCGTGCCACAGCTGCT-GAGCCTTCACAACACGCTTGACCCG 9106384 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| | ||||| || || || ||| ||||| || || ||||| || |||| Sbjct 9106383 CCCCTCCTTCTCATACTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAG 9106324 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || ||||| || | || ||||||| |||||||| | || |||| ||||| Sbjct 9106323 CCCGGGGCACTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCGACTCTCTTCAT 9106264 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTC 78072 || | || || ||||| | ||| || || ||||||| || ||| || || || || | Sbjct 9106263 GAACAAGTCGGGGATCCACA-AGCCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCC 9106205 Query 78073 CTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 78132 |||| ||||| || || || || || || | | ||| | |||||||| || || || | Sbjct 9106204 CTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCAAAGTGCCATGGCTCCAGGTACA 9106145 Query 78133 TTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTAT 78192 | || | | || |||| || || || ||||| || | ||| | || ||||| || | Sbjct 9106144 TGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACATAGCGCGCCGTGTTGTTGT 9106085 Query 78193 AAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTC 78252 | ||||||| ||| || | | ||||| || | || || || |||| ||| || || | Sbjct 9106084 AGACTCTCAGCATGGGGACCAGCCCGTTTGAGTTGCCGTTGGTGCCAGCAATGTAGCTCC 9106025 Query 78253 CACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAG 78312 | ||| | || || | | | || |||||||| || ||| || || || | Sbjct 9106024 CCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGACTTGGAGATGAGGG 9105965 Query 78313 CGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAA 78372 | || | |||| || || || || || || || ||||||||| ||||| | || || | Sbjct 9105964 CACACTGCTTCAGCGTGTCATAAATGCCGTCGATGCTGTCATCCTTCATGGTGAGCAGGA 9105905 Query 78373 AACAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCA 78428 | ||||| |||| ||| || || |||||||| || || | || ||||| || Sbjct 9105904 AGCAGCTGGACAGCTGAGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTAGGAGACGCG 9105849 Query 78429 TGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 || || ||||| || || || || || ||||| || || || || | || || | | Sbjct 9105848 TGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATAGCTGTT 9105789 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | || || || || || || | ||| | ||| ||||| || | || || || Sbjct 9105788 TTGTGGATACCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCG 9105729 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || || |||| |||||| || |||| ||| || || ||||| ||||||| || || Sbjct 9105728 TTGATCTTCAGCAAGTAGGAACGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAA 9105669 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATG 78668 ||||| ||| |||| || | || || || ||||||| || ||| || || | | Sbjct 9105668 TCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTTTCAAGAACGATGTCGAGG 9105609 Query 78669 ACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAA 78728 | || || ||||| || | | ||| ||| || || ||||| || | Sbjct 9105608 GTCTCCTTGGAGATCATAGGGGAGTGGCGTCTATTCAGAGGGTTGACGTAGTTGAACAGG 9105549 Query 78729 TCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATT 78788 || ||||| || ||||| || | ||| ||||| |||||||| || || || || || || Sbjct 9105548 TCCTCCATCACCTCACTGAACACTTTCTTTGTCTCCTTGTGCAGGTTGGAGACGGCGATC 9105489 Query 78789 CTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCC 78848 | |||||| || || ||||| || || |||| || || ||||| || || ||||| Sbjct 9105488 CGTGCAGCGAGGATGGCATAGTCTGGGTGTTTGGTCGTGAGGGTGGCAGCGATCTCTGCA 9105429 Query 78849 GCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATG 78908 || | | | || | ||| | || ||||| ||| | || || || || || || ||||| Sbjct 9105428 GCCAGAGTGTCGAGCTCCACTGTGGTGACACCACTGTACAGACCCTGGATCACCTTCATT 9105369 Query 78909 GCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATACG 78967 | ||| | ||||| || || |||| ||||| ||||| || || |||| ||||| Sbjct 9105368 GTGATCTGAGTTGGATCCACGAAGTCAGAGTTCAGCCCATAGCA-AAGCTTCTGGATACG 9105310 Query 78968 AGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| ||||||||||| || || || ||| | || ||||| Sbjct 9105309 AGAGGTGATTTTATCGAACATGACGCGCTCTTGGCGTCCAT 9105269 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| ||||||||| || | || || || || || || | Sbjct 9107627 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCAGCGATGTGGATGT 9107568 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 |||| ||||| || || |||||| | || |||| ||||| ||||| || | ||||||| Sbjct 9107567 TCATGGACTGGCTCTGGTCGATGTAGGCGCCTCGGTCAGCAGCCATCTTCAGTATGGTCT 9107508 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||| | ||||| ||| || || | ||||||||||| Sbjct 9107507 TCTGGGAGATTTCCCACACGGTTTTATAAAGCTGCTTCAGATCATCTGGAA 9107457 >seq11 Length=13916851 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 77732 TATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTT 77791 |||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 4879581 TATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCT 4879522 Query 77792 ATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || | || || || ||||| ||||||| ||||| || Sbjct 4879521 GTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTTCCCGTTTCTGTCTGTGACTCGATGAT 4879462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694586090996000