Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7 150 4e-31 seq11 86.0 1e-11 >seq7 Length=16146599 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | |||||||||||| || || |||||||||||||| ||||| |||| | || Sbjct 1869991 CTCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTG 1869932 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || |||||||| |||||||||||||| | | ||| ||| Sbjct 1869931 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 1869872 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||||| |||| | | |||| ||| || || ||| Sbjct 1869871 TCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGA 1869812 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| |||||||| |||| |||||| Sbjct 1869811 GTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 Score = 118 bits (130), Expect = 2e-21 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| |||||||| || || ||||| || |||||||||||||| | | || Sbjct 1869535 CTCAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTG 1869476 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || || || || || || |||||||||||||| | | ||| ||| Sbjct 1869475 CGGCCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCT 1869416 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || || ||||||| |||| | | |||| ||| ||| || || Sbjct 1869415 TCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCC 1869359 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||| || || || || || || |||||||| |||| |||||| || Sbjct 1869358 AAAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 1869312 Score = 105 bits (116), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| || || |||||||| ||||||||||| |||| | ||| | || ||||| Sbjct 1869752 GACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTC 1869693 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || || ||||||||||| || | ||||||||| | | ||| || || || || || Sbjct 1869692 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTG 1869633 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 ||||| || ||| | || | | |||| ||| ||| || || || || || || Sbjct 1869632 GATTTTGGCCTTAACATTTTCAATGGTGTC---ACTGGGCTCGACCTCCAGGGTGATGGT 1869576 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| |||| |||||| Sbjct 1869575 CTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 >seq11 Length=13916851 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || ||||| ||||||||||| || | | || |||||||| || || || || Sbjct 8385147 CCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCC 8385088 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| ||| || ||||| || || || ||||| || Sbjct 8385087 TTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 8385031 Query 152082 AGAGTCTTCACGAAGACCTGCAT--TTTACCCT 152112 || ||||||||||||| |||||| |||| ||| Sbjct 8385030 AGGGTCTTCACGAAGATCTGCATGGTTTAACCT 8384998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153679988791275