Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq31 190 3e-43 seq33 150 3e-31 >seq31 Length=6322506 Score = 190 bits (210), Expect = 3e-43 Identities = 183/235 (78%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 |||||||| |||| |||||| |||||||||||||||||||||||| ||| |||| ||| Sbjct 3651514 TTGACGATGTCGAATCCCACGCTTCCGCCGAAGGTGCTGGGCTTCCAATACTCCGGCGAG 3651573 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| |||| | ||| ||||||||| | || ||||||| ||| | ||| || Sbjct 3651574 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 3651633 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 ||||||||||||| ||| || | |||||| |||| | | |||| ||| ||||||||| Sbjct 3651634 TCACCGAAGATGGAGTTAGGCCTGGGCTTCTCCAAGAGCAGGCCGGGGTAGAGCTCCACA 3651693 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || ||||||| |||||| | || || | || || || ||| ||||||||| Sbjct 3651694 GCATCGACGTGTCCGTACATCTCCTCCAGCACTGCGGCCATTTCCGTTTCTCCTG 3651748 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| ||| |||||| ||| || || || Sbjct 3653373 TCACCAATCAGGATGAGCCGCGTGGTCTGGAAGAGTCTTTCGTCATCCCAGTCGGGGTGC 3653432 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | | |||| || |||||||| | |||||| |||| | ||| || |||||||||||| Sbjct 3653433 ACCTCCTTCAACACGTCGCACACGCGGTTGTGCTCCCGCATCCAAATGGTGGCGTACATC 3653492 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || || || || ||||||||||| ||||| || || ||||| Sbjct 3653493 ATCAGACCCGGGACCAGGCCAAACGCCTCATGGCCAACAGC 3653533 >seq33 Length=5239102 Score = 150 bits (166), Expect = 3e-31 Identities = 204/282 (72%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 8272 CTCCTCA--TCG-GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 ||||||| ||| ||||| |||| | | | ||||||| |||| |||| ||| || Sbjct 2354797 CTCCTCACTTCGTGGAACATGGAAGTCCACATATGGACACCACTTGGTGTTGAGACACAC 2354856 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 || || | || || | |||||||| ||| ||| ||||| ||||| ||||| Sbjct 2354857 CAGTTTCTTCAAAGAAGCTGTTTTGACGATGTTGAAGCCCGTTTCTCCTCCGAACGTGCT 2354916 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 |||||||||||| | |||||||||||| ||| ||| |||||||| | |||||| || Sbjct 2354917 CGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAAGGAGAAGGG 2354976 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 ||| |||| ||| | ||||||||||| || || ||| ||||| | || |||| || Sbjct 2354977 AGCACCCATCTCCACCATGCTCTCACCAAATATACTGTTAGGACGAGCTTTCTCCAGCAG 2355036 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || ||| ||||| | ||||| ||| |||| ||| || || || Sbjct 2355037 GACTCCAGTGTAAAACTCCAGAGCATCGATGTCCCCATAGAG 2355078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716791446856000