Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paralichthys_20olivaceus_20[refseq_20GCF_5F001970005.1_202017-01-24] 9,525 sequences; 643,911,827 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7 140 3e-28 >seq7 Length=16146599 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||||||| || ||| ||| ||||| ||||| ||||||||||| ||||| Sbjct 1869760 AGACGCAAGACCAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 1869701 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||||||||| || || ||||| ||||| | || | || ||| Sbjct 1869700 CCGTCTTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCT 1869641 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || |||| || | ||| | | ||||| || | ||| ||||||| || Sbjct 1869640 TTGTCC-TGGATTTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGT 1869582 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || || || || |||||||| Sbjct 1869581 GATGGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 1869543 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| ||||| || ||| ||||||||| ||||| || || || |||||||| Sbjct 1869532 AGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGG 1869473 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| ||||| | || | || ||| Sbjct 1869472 CCGTCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1869413 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || | || |||| || | | ||||| || | ||| ||||||| || Sbjct 1869412 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAAGT 1869354 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| ||||| ||||| || || |||||||| || Sbjct 1869353 GATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 1869312 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||| || || || || |||||||| |||||||| Sbjct 1869988 AGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCGGACAGGGTGCGG 1869929 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| ||||| | || | || ||| Sbjct 1869928 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1869869 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || | || |||| || | | |||||||| | ||| ||||||| || Sbjct 1869868 TTATCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGAGT 1869810 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || |||||||| Sbjct 1869809 GATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1869771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462248956930000