Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11038 618 5e-172 seq15624 116 4e-21 seq19576 114 2e-20 seq3431 84.2 3e-11 >seq11038 Length=78219 Score = 618 bits (684), Expect = 5e-172 Identities = 1317/1958 (67%), Gaps = 33/1958 (2%) Strand=Plus/Plus Query 53078 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 53137 || ||| ||||||| ||||| || ||||| | | || || | | | || ||| Sbjct 22155 ATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCGTTCAGTGAGGTCCTTCAGCAGA 22214 Query 53138 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 53197 || || || || | ||||| |||||||| | ||||| || ||||| || || ||||| Sbjct 22215 TGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTAGATGTTGCTGGTG 22274 Query 53198 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 53257 || | ||| | |||||||| || || | ||||| || || || || || ||||| || Sbjct 22275 TAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTGGGCATGGGG 22334 Query 53258 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 53317 |||| ||| | ||| ||||| | ||||| | | || || || || || | | ||| Sbjct 22335 GCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAG 22394 Query 53318 TTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCG 53377 | ||| || || | || || || ||||| || |||| | Sbjct 22395 TCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATACTGCAGAATGCCTCTACTCACT 22454 Query 53378 TACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCT 53437 || ||| ||||| || || || || || || || || | || || || ||||| Sbjct 22455 GGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAGCTTGCCTCC 22514 Query 53438 AATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA 53497 | ||| | || || ||||| || ||||||| |||| || || ||||| |||| Sbjct 22515 AGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGGCTT 22574 Query 53498 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 53557 |||||||||||| | ||| || || || ||||| | || || |||||||| ||||| Sbjct 22575 TCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCAATCCCGATT 22634 Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 || || || | ||| || || | || ||||| |||| || || || ||||| || || Sbjct 22635 GGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATGTCAATG 22694 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTT---TGACC---ACATCCTTCAGTTTGAGAAAA 53671 || || ||||||||||| |||||||||| ||||| || ||| |||| || Sbjct 22695 ATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAGGCAAGCTT---TTTG---AAG 22748 Query 53672 TCAAA---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACG 53728 ||||| || | | ||| ||||||| | ||||| || |||| ||||| ||| Sbjct 22749 TCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGCAATGGAGGCCAAGTTACAGACG 22808 Query 53729 GCTACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 || || ||| || || | | ||| | | ||||||||||| | ||||| || |||| Sbjct 22809 GCCACTTCATCTTTGCTT--GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGA 22866 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 |||| || ||||| || || |||||||| ||||||| ||||| || || | ||| | | Sbjct 22867 TGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAG 22926 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 | || || ||||| |||| || || || || || | ||| | ||||||| | | Sbjct 22927 GTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCACAACTGCTGAGCCTTGACCA 22986 Query 53907 TAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCC 53964 || ||| || ||| ||| |||||| | || |||||||| || || Sbjct 22987 CCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGTAGAGCTTC--TCAAACTCCTCCCC 23044 Query 53965 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 54024 |||| | ||||| ||||| || ||| || ||||||| ||||| || || | Sbjct 23045 CCAACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAGACCAGTCCTGGTTGTT 23104 Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC 54083 | ||| | ||||| || |||||||| ||||| || || ||| || || |||| | | Sbjct 23105 TTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGTGCCC 23163 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 | || ||||| || || || ||||| || || || ||||| | | | |||| | |||| Sbjct 23164 TCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAGTCAAACACATCAAAGTGCC 23223 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 | || |||| |||||||| | | | || || ||||| || || || || || | ||| | Sbjct 23224 ATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAGC 23283 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 |||||||| || || ||||||| ||| || | || ||||| || |||||| || | Sbjct 23284 GTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCATTTGAGTTACCATTTGTTC 23343 Query 54264 CGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCA 54323 | | || || || || | | | |||| |||| || || ||| ||||| ||||| Sbjct 23344 CAGCAATGTAACTACCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAG 23403 Query 54324 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 54383 ||||||||| | || ||| |||| | |||||||| ||||| || || || |||||| Sbjct 23404 ATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCT 23463 Query 54384 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGG 54443 ||||| || || || ||||| || | ||| | | | | || || || || || | | Sbjct 23464 TCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTATTGGTGCCTGCGTTGAACAGAG 23523 Query 54444 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGT 54503 | ||||| || || || ||||| || ||||| || || ||||| ||||| || |||| | Sbjct 23524 TGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCAT 23583 Query 54504 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 54563 ||||||| | || ||||| || || || | ||| | ||||||||| || | ||| Sbjct 23584 CTATATCAGTGTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGGCGCTCAG 23643 Query 54564 CGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 | | || || |||||||||| |||||| || || || ||||| ||||| | | Sbjct 23644 CCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCTAATGTCTTAAAGCCAAAGAAAT 23703 Query 54624 TGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA- 54682 |||| ||||| || | || ||||| ||| | |||||||| || | | |||| | Sbjct 23704 TGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAG 23761 Query 54683 -ACTACATCCATGGTAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTG 54739 || | ||| | ||| ||| || || || || || || | |||| ||||||| Sbjct 23762 GACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGAGTGGCGCTTATTTAAAGGATTG 23819 Query 54740 ACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGA 54799 ||||||| || | ||||| ||| || ||||| || | || || || ||||| || || Sbjct 23820 ACATAGTGGAACAGATCCTCCATGACATCACTGAACACCTTCTTGGTCTCTTTATGGAGG 23879 Query 54800 TTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTG 54859 || || || || || | || || || ||||||||||| || || | || || ||| Sbjct 23880 TTGGACACAGCAATCCGTGCAGCCAGGATGGCATAATCTGGGTGCTTCGTGGTCAGTGTG 23939 Query 54860 GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 54919 || || || || || | || |||||||| || || || || ||||| | || | ||| Sbjct 23940 GCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAGTGGTCACTCCGCTGTACAGACCT 23999 Query 54920 TGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACAT 54979 ||||| |||||||| | |||| | || || | | || | || | |||||||| Sbjct 24000 TGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAACTCTGCATTGAGCCCATAACAG 24059 Query 54980 AATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 | || || ||||| |||||||||||||||||||| Sbjct 24060 AGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 24097 >seq15624 Length=12484 Score = 116 bits (128), Expect = 4e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 ||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | | Sbjct 11343 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 11402 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGG 53505 |||||||||| || || |||| | || |||| || || || || || || ||||| Sbjct 11403 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCA--CTTTCGAATGG 11460 Query 53506 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 53565 |||| | |||||| || ||||| || | || ||||||||||| || |||||||| || Sbjct 11461 ATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTG 11520 Query 53566 TCTCTTATTAGA 53577 | | | ||||| Sbjct 11521 GCGCATGTTAGA 11532 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| || ||||||||||| || || || | |||||||| |||| ||| || || || Sbjct 11855 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAGATTCTGCTGGTTG 11914 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| | || || ||||| || || || ||| |||| ||||| || || |||| || Sbjct 11915 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 11974 Query 53870 TCTATAATCGCTTTCCA 53886 || ||||| || | ||| Sbjct 11975 TCAATAATGGCATACCA 11991 >seq19576 Length=429644 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 417021 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGCCCAGGCATTAGACCCCTCTTTT 416962 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | |||| ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 416961 TCAGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 416902 Query 24277 CAATAAGTCTTTCTCC 24292 | | || |||||| || Sbjct 416901 CCACAATTCTTTCACC 416886 >seq3431 Length=351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| | ||||| | ||| ||||| || || ||||||||||| ||||| || || | Sbjct 256 CCTCGTCGCGGCTAATAAGTTCATTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 315 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 24252 | ||||| || |||| ||||| |||||||| |||| Sbjct 316 TCAGCCAGAAAATGGCGGCAAAGGATCCAGAGAAGA 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593375297033760