Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq27510 122 9e-23
seq44130 100 3e-16
seq5499 100 3e-16
seq19576 96.9 4e-15
>seq27510
Length=34911
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || || || |||||||| | || || ||| | |
Sbjct 30134 ATGCAAATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTTTGGAAGTGGAACCTAGT 30075
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| ||| || | ||||||||||| ||||| | ||||||
Sbjct 30074 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAG 30015
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | ||| || || ||||| || || | ||||||||| |||||||||
Sbjct 30014 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCTGACTACAAC 29955
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| |||||||| |||| || || | ||| |||| ||||| || ||
Sbjct 29954 ATTCAGAAGGAATCCACCCTCCACTTGGTGCTGCGTTTGAGAGGAGG 29908
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || || || || || || || || ||||||||||| | || || || |
Sbjct 30365 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 30306
Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | ||||| | |||| || || | || || || || ||||| | ||
Sbjct 30305 AGTGACACAATTGAAAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGA 30247
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | || || | || || || || || || || | ||||| ||| |||||
Sbjct 30246 CCAGCAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTA 30187
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| |||| || || | ||| | || |||| || ||
Sbjct 30186 CAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTACGTCTGAGAGGAGG 30136
>seq44130
Length=14217
Score = 100 bits (110), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| || || || || || ||||| ||||| || || |||||||| | | ||| || ||
Sbjct 12062 AACATACAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGCAGGTCAAACCC 12003
Query 40747 ACCGACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| ||||| | || ||| | | || || | ||| ||||| || ||||| ||| | ||
Sbjct 12002 AGCGACATCACTGAAAATGTTATAGCCAAGA-TTCAGGACAAGGAAGGCATTCCCCCAGA 11944
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| | || |||| | ||||| ||||| || || | ||||||||| ||||||
Sbjct 11943 TCAGCAGAGGCTGATCTTTGTTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTA 11884
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| || ||| || || || || |||| | |||| |||
Sbjct 11883 CAACATCCAGAAAGAATTCACCCTTCACCTTGTCCTGCGTCTCTGGGGTGGC 11832
>seq5499
Length=1901
Score = 100 bits (110), Expect = 3e-16
Identities = 93/116 (80%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| ||| || ||||||||||| | |||||||| ||||||||||| || ||
Sbjct 1525 GGTGGAGCGCTTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTACGGGTTCCA 1584
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916
|||||| ||||||||| | |||||||| ||||| | || ||||||||||| ||
Sbjct 1585 GATCGCGATGGAGAACATCCACTCGGAGATGTA--CAGCCTGCTCATCGACACCTA 1638
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/123 (78%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743
|||| ||||||||||| ||| | ||| |||||||| |||| ||| | ||| |
Sbjct 1313 AGGTCGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGATGAGAGGTTC 1371
Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803
||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1372 TTCATTTCTCACGTTTTGGCCTTTTTCGCCGCCAGTGACGGCATTGTCAACGAGAACCTG 1431
Query 116804 GTC 116806
|||
Sbjct 1432 GTC 1434
>seq19576
Length=429644
Score = 96.9 bits (106), Expect = 4e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||| | || |||||| | |||| ||| | ||||||||||| ||||| |||
Sbjct 415210 GAGCCACTGCTTCAAGAAAACCCCAGAAGGTTTGTGTTGTTCCCCATACAGTACCCTGAC 415269
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688
|| ||| |||||||| ||||| |||| || |||||||| || ||||||||
Sbjct 415270 ATCTGGAAAATGTACAAGCAGGCCCAGGCATCCTTCTGGACAGTGGAGGAGGT 415322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514918685521120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |