Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq27510 122 9e-23 seq44130 100 3e-16 seq5499 100 3e-16 seq19576 96.9 4e-15 >seq27510 Length=34911 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || |||||||| | || || ||| | | Sbjct 30134 ATGCAAATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTTTGGAAGTGGAACCTAGT 30075 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||||||||| ||||| | |||||| Sbjct 30074 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAG 30015 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 30014 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCTGACTACAAC 29955 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| |||| || || | ||| |||| ||||| || || Sbjct 29954 ATTCAGAAGGAATCCACCCTCCACTTGGTGCTGCGTTTGAGAGGAGG 29908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || ||||||||||| | || || || | Sbjct 30365 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 30306 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | ||||| | |||| || || | || || || || ||||| | || Sbjct 30305 AGTGACACAATTGAAAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGA 30247 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || || | || || || || || || || | ||||| ||| ||||| Sbjct 30246 CCAGCAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTA 30187 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || | ||| | || |||| || || Sbjct 30186 CAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTACGTCTGAGAGGAGG 30136 >seq44130 Length=14217 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || || || || || || ||||| ||||| || || |||||||| | | ||| || || Sbjct 12062 AACATACAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGCAGGTCAAACCC 12003 Query 40747 ACCGACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | || ||| | | || || | ||| ||||| || ||||| ||| | || Sbjct 12002 AGCGACATCACTGAAAATGTTATAGCCAAGA-TTCAGGACAAGGAAGGCATTCCCCCAGA 11944 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| | || |||| | ||||| ||||| || || | ||||||||| |||||| Sbjct 11943 TCAGCAGAGGCTGATCTTTGTTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTA 11884 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| || ||| || || || || |||| | |||| ||| Sbjct 11883 CAACATCCAGAAAGAATTCACCCTTCACCTTGTCCTGCGTCTCTGGGGTGGC 11832 >seq5499 Length=1901 Score = 100 bits (110), Expect = 3e-16 Identities = 93/116 (80%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| || ||||||||||| | |||||||| ||||||||||| || || Sbjct 1525 GGTGGAGCGCTTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTACGGGTTCCA 1584 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916 |||||| ||||||||| | |||||||| ||||| | || ||||||||||| || Sbjct 1585 GATCGCGATGGAGAACATCCACTCGGAGATGTA--CAGCCTGCTCATCGACACCTA 1638 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||| ||||||||||| ||| | ||| |||||||| |||| ||| | ||| | Sbjct 1313 AGGTCGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGATGAGAGGTTC 1371 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 1372 TTCATTTCTCACGTTTTGGCCTTTTTCGCCGCCAGTGACGGCATTGTCAACGAGAACCTG 1431 Query 116804 GTC 116806 ||| Sbjct 1432 GTC 1434 >seq19576 Length=429644 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| | || |||||| | |||| ||| | ||||||||||| ||||| ||| Sbjct 415210 GAGCCACTGCTTCAAGAAAACCCCAGAAGGTTTGTGTTGTTCCCCATACAGTACCCTGAC 415269 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || ||| |||||||| ||||| |||| || |||||||| || |||||||| Sbjct 415270 ATCTGGAAAATGTACAAGCAGGCCCAGGCATCCTTCTGGACAGTGGAGGAGGT 415322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514918685521120